Analysis of interatomic Contacts of Structural Units in PDB entry:
8UO9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UO9 entry

There are 2 chains in PDB entry 8UO9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 144GLY 738
B
 GLN 1SER 119
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8UO9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
146 160Right-handed alpha
Helix 2
AA2
A
162 188Right-handed alpha
Helix 3
AA3
A
206 208Right-handed 310
Helix 4
AA4
A
209 230Right-handed alpha
Helix 5
AA5
A
230 250Right-handed alpha
Helix 6
AA6
A
254 282Right-handed alpha
Helix 7
AA7
A
285 289Right-handed 310
Helix 8
AA8
A
290 296Right-handed alpha
Helix 9
AA9
A
297 315Right-handed alpha
Helix 10
AB1
A
332 352Right-handed alpha
Helix 11
AB2
A
357 365Right-handed alpha
Helix 12
AB3
A
366 386Right-handed alpha
Helix 13
AB4
A
420 438Right-handed alpha
Helix 14
AB5
A
443 483Right-handed alpha
Helix 15
AB6
A
596 607Right-handed alpha
Helix 16
AB7
A
608 616Right-handed alpha
Helix 17
AB8
A
623 645Right-handed alpha
Helix 18
AB9
A
647 677Right-handed alpha
Helix 19
AC1
A
681 707Right-handed alpha
Helix 20
AC2
A
713 731Right-handed alpha
Helix 21
AC3
B
61 64Right-handed 310
Helix 22
AC4
B
73 75Right-handed 310
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There are 6 sheets in PDB entry 8UO9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
515 516first strand
Strand 2
A
535 536parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
525 532first strand
Strand 2
A
545 555parallel
Strand 3
A
571 575parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 559first strand
Strand 2
A
578 579parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
77 82anti-parallel
Strand 4
B
67 72anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
113 117parallel
Strand 3
B
91 99anti-parallel
Strand 4
B
32 39anti-parallel
Strand 5
B
45 50anti-parallel
Strand 6
B
58 59anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
113 117parallel
Strand 3
B
91 99anti-parallel
Strand 4
B
106 109anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il