Analysis of interatomic Contacts of Structural Units in PDB entry:
8UOP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UOP entry

There are 2 chains in PDB entry 8UOP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0LYS 435
B
 HIS 0LYS 435
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8UOP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 73Right-handed alpha
Helix 2
AA2
A
74 78Right-handed 310
Helix 3
AA3
A
86 92Right-handed alpha
Helix 4
AA4
A
93 99Right-handed alpha
Helix 5
AA5
A
107 120Right-handed alpha
Helix 6
AA6
A
121 126Right-handed alpha
Helix 7
AA7
A
129 134Right-handed alpha
Helix 8
AA8
A
153 156Right-handed 310
Helix 9
AA9
A
176 197Right-handed alpha
Helix 10
AB1
A
219 230Right-handed alpha
Helix 11
AB2
A
245 250Right-handed alpha
Helix 12
AB3
A
271 286Right-handed alpha
Helix 13
AB4
A
305 310Right-handed alpha
Helix 14
AB5
A
325 335Right-handed alpha
Helix 15
AB6
A
344 349Right-handed alpha
Helix 16
AB7
A
350 364Right-handed alpha
Helix 17
AB8
A
380 389Right-handed alpha
Helix 18
AB9
A
401 416Right-handed alpha
Helix 19
AC1
A
425 429Right-handed 310
Helix 20
AC2
B
64 73Right-handed alpha
Helix 21
AC3
B
86 99Right-handed alpha
Helix 22
AC4
B
107 124Right-handed alpha
Helix 23
AC5
B
130 134Right-handed 310
Helix 24
AC6
B
153 156Right-handed 310
Helix 25
AC7
B
174 188Right-handed alpha
Helix 26
AC8
B
192 196Right-handed 310
Helix 27
AC9
B
214 218Right-handed 310
Helix 28
AD1
B
219 228Right-handed alpha
Helix 29
AD2
B
271 285Right-handed alpha
Helix 30
AD3
B
301 306Right-handed alpha
Helix 31
AD4
B
325 336Right-handed alpha
Helix 32
AD5
B
344 348Right-handed 310
Helix 33
AD6
B
350 363Right-handed alpha
Helix 34
AD7
B
380 389Right-handed alpha
Helix 35
AD8
B
401 419Right-handed alpha
Helix 36
AD9
B
425 430Right-handed 310
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There are 6 sheets in PDB entry 8UOP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
25 26anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
18 23anti-parallel
Strand 3
A
35 37anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 151first strand
Strand 2
A
164 168anti-parallel
Strand 3
A
239 243anti-parallel
Strand 4
A
288 292parallel
Strand 5
A
315 318parallel
Strand 6
A
340 343parallel
Strand 7
A
367 371parallel
Strand 8
A
393 395parallel
Strand 9
A
144 151parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
20 24anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 243first strand
Strand 2
B
164 168anti-parallel
Strand 3
B
144 151anti-parallel
Strand 4
B
392 395parallel
Strand 5
B
367 371parallel
Strand 6
B
340 342parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 292first strand
Strand 2
B
315 317parallel
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