Analysis of interatomic Contacts of Structural Units in PDB entry:
8UP1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UP1 entry

There are 4 chains in PDB entry 8UP1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1GLY 357
B
 THR 1GLY 357
C
 THR 1GLY 357
D
 THR 1GLY 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 8UP1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 27Right-handed alpha
Helix 2
AA2
A
49 67Right-handed alpha
Helix 3
AA3
A
70 88Right-handed alpha
Helix 4
AA4
A
90 105Right-handed alpha
Helix 5
AA5
A
110 133Right-handed alpha
Helix 6
AA6
A
134 161Right-handed alpha
Helix 7
AA7
A
164 191Right-handed alpha
Helix 8
AA8
A
194 227Right-handed alpha
Helix 9
AA9
A
228 254Right-handed alpha
Helix 10
AB1
A
275 294Right-handed alpha
Helix 11
AB2
A
315 334Right-handed alpha
Helix 12
AB3
A
338 354Right-handed alpha
Helix 13
AB4
B
10 24Right-handed alpha
Helix 14
AB5
B
25 27Right-handed 310
Helix 15
AB6
B
49 67Right-handed alpha
Helix 16
AB7
B
70 88Right-handed alpha
Helix 17
AB8
B
90 108Right-handed alpha
Helix 18
AB9
B
110 133Right-handed alpha
Helix 19
AC1
B
134 161Right-handed alpha
Helix 20
AC2
B
164 191Right-handed alpha
Helix 21
AC3
B
194 227Right-handed alpha
Helix 22
AC4
B
228 254Right-handed alpha
Helix 23
AC5
B
275 294Right-handed alpha
Helix 24
AC6
B
317 334Right-handed alpha
Helix 25
AC7
B
338 353Right-handed alpha
Helix 26
AC8
B
354 356Right-handed 310
Helix 27
AC9
C
10 26Right-handed alpha
Helix 28
AD1
C
49 67Right-handed alpha
Helix 29
AD2
C
70 86Right-handed alpha
Helix 30
AD3
C
90 108Right-handed alpha
Helix 31
AD4
C
110 133Right-handed alpha
Helix 32
AD5
C
134 161Right-handed alpha
Helix 33
AD6
C
164 191Right-handed alpha
Helix 34
AD7
C
194 227Right-handed alpha
Helix 35
AD8
C
228 255Right-handed alpha
Helix 36
AD9
C
275 294Right-handed alpha
Helix 37
AE1
C
315 333Right-handed alpha
Helix 38
AE2
C
334 336Right-handed 310
Helix 39
AE3
C
338 354Right-handed alpha
Helix 40
AE4
C
355 357Right-handed 310
Helix 41
AE5
D
10 29Right-handed alpha
Helix 42
AE6
D
49 67Right-handed alpha
Helix 43
AE7
D
70 88Right-handed alpha
Helix 44
AE8
D
90 108Right-handed alpha
Helix 45
AE9
D
110 133Right-handed alpha
Helix 46
AF1
D
134 161Right-handed alpha
Helix 47
AF2
D
164 191Right-handed alpha
Helix 48
AF3
D
194 227Right-handed alpha
Helix 49
AF4
D
228 255Right-handed alpha
Helix 50
AF5
D
275 294Right-handed alpha
Helix 51
AF6
D
315 333Right-handed alpha
Helix 52
AF7
D
334 336Right-handed 310
Helix 53
AF8
D
338 352Right-handed alpha
Helix 54
AF9
D
353 357Right-handed 310
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There are 4 sheets in PDB entry 8UP1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
40 43anti-parallel
Strand 3
A
34 36anti-parallel
Strand 4
B
296 302anti-parallel
Strand 5
B
305 311anti-parallel
Strand 6
B
266 272anti-parallel
Strand 7
B
257 262anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 262first strand
Strand 2
A
266 272anti-parallel
Strand 3
A
305 311anti-parallel
Strand 4
A
296 302anti-parallel
Strand 5
D
32 37anti-parallel
Strand 6
D
40 45anti-parallel
Strand 7
D
2 6anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
40 45anti-parallel
Strand 3
B
32 37anti-parallel
Strand 4
C
296 302anti-parallel
Strand 5
C
305 311anti-parallel
Strand 6
C
266 272anti-parallel
Strand 7
C
257 263anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 6first strand
Strand 2
C
40 45anti-parallel
Strand 3
C
32 37anti-parallel
Strand 4
D
296 301anti-parallel
Strand 5
D
306 311anti-parallel
Strand 6
D
266 272anti-parallel
Strand 7
D
257 263anti-parallel
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