Analysis of interatomic Contacts of Structural Units in PDB entry:
8UP9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UP9 entry

There are 2 chains in PDB entry 8UP9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLN 171
B
 SER 4ILE 168
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8UP9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 17Right-handed 310
Helix 2
AA2
A
33 41Right-handed alpha
Helix 3
AA3
A
57 61Right-handed 310
Helix 4
AA4
A
62 76Right-handed alpha
Helix 5
AA5
A
89 99Right-handed alpha
Helix 6
AA6
A
100 104Right-handed 310
Helix 7
AA7
A
123 138Right-handed alpha
Helix 8
AA8
A
152 154Right-handed 310
Helix 9
AA9
B
15 17Right-handed 310
Helix 10
AB1
B
33 41Right-handed alpha
Helix 11
AB2
B
57 61Right-handed 310
Helix 12
AB3
B
62 75Right-handed alpha
Helix 13
AB4
B
89 99Right-handed alpha
Helix 14
AB5
B
100 104Right-handed 310
Helix 15
AB6
B
123 138Right-handed alpha
Helix 16
AB7
B
152 154Right-handed 310
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There are 6 sheets in PDB entry 8UP9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
8 12parallel
Strand 3
A
80 84parallel
Strand 4
A
107 111parallel
Strand 5
A
141 146parallel
Strand 6
A
149 151anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 22first strand
Strand 2
A
27 30anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 159first strand
Strand 2
A
164 167anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 52first strand
Strand 2
B
8 12parallel
Strand 3
B
80 84parallel
Strand 4
B
107 111parallel
Strand 5
B
141 146parallel
Strand 6
B
149 151anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 22first strand
Strand 2
B
27 30anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 159first strand
Strand 2
B
164 167anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il