Analysis of interatomic Contacts of Structural Units in PDB entry:
8UPH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UPH entry

There are 2 chains in PDB entry 8UPH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 9	ALA 546
B	GLU 9	ASP 524

There are 35 helices in PDB entry 8UPH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	15	Right-handed 310
Helix 2	AA2	A	47	52	Right-handed alpha
Helix 3	AA3	A	54	59	Right-handed alpha
Helix 4	AA4	A	62	67	Right-handed alpha
Helix 5	AA5	A	68	74	Right-handed alpha
Helix 6	AA6	A	74	82	Right-handed alpha
Helix 7	AA7	A	116	130	Right-handed alpha
Helix 8	AA8	A	137	154	Right-handed alpha
Helix 9	AA9	A	189	193	Right-handed 310
Helix 10	AB1	A	194	202	Right-handed alpha
Helix 11	AB2	A	242	253	Right-handed alpha
Helix 12	AB3	A	283	330	Right-handed alpha
Helix 13	AB4	A	332	340	Right-handed alpha
Helix 14	AB5	A	340	346	Right-handed alpha
Helix 15	AB6	A	369	381	Right-handed alpha
Helix 16	AB7	A	399	403	Right-handed 310
Helix 17	AB8	A	475	546	Right-handed alpha
Helix 18	AB9	B	11	16	Right-handed alpha
Helix 19	AC1	B	18	22	Right-handed 310
Helix 20	AC2	B	47	52	Right-handed alpha
Helix 21	AC3	B	55	59	Right-handed 310
Helix 22	AC4	B	62	66	Right-handed 310
Helix 23	AC5	B	74	82	Right-handed alpha
Helix 24	AC6	B	116	130	Right-handed alpha
Helix 25	AC7	B	137	154	Right-handed alpha
Helix 26	AC8	B	189	193	Right-handed 310
Helix 27	AC9	B	194	204	Right-handed alpha
Helix 28	AD1	B	242	253	Right-handed alpha
Helix 29	AD2	B	283	327	Right-handed alpha
Helix 30	AD3	B	332	340	Right-handed alpha
Helix 31	AD4	B	344	348	Right-handed 310
Helix 32	AD5	B	369	380	Right-handed alpha
Helix 33	AD6	B	393	398	Right-handed alpha
Helix 34	AD7	B	398	403	Right-handed alpha
Helix 35	AD8	B	476	524	Right-handed alpha

There are 11 sheets in PDB entry 8UPH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	217	220	anti-parallel
Strand 3	A	39	44	anti-parallel
Strand 4	A	29	34	anti-parallel
Strand 5	A	103	110	anti-parallel
Strand 6	A	92	100	anti-parallel
Strand 7	A	83	87	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	169	171	anti-parallel
Strand 3	A	157	163	anti-parallel
Strand 4	A	270	276	anti-parallel
Strand 5	A	256	262	anti-parallel
Strand 6	A	207	209	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	365	first strand
Strand 2	A	352	355	anti-parallel
Strand 3	A	423	427	anti-parallel
Strand 4	A	411	415	anti-parallel
Strand 5	A	388	391	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	438	first strand
Strand 2	A	462	467	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	446	447	first strand
Strand 2	A	454	455	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	33	first strand
Strand 2	B	103	110	anti-parallel
Strand 3	B	92	100	anti-parallel
Strand 4	B	83	87	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	44	first strand
Strand 2	B	219	220	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	169	176	anti-parallel
Strand 3	B	157	163	anti-parallel
Strand 4	B	267	276	anti-parallel
Strand 5	B	256	264	anti-parallel
Strand 6	B	206	209	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	365	first strand
Strand 2	B	352	355	anti-parallel
Strand 3	B	423	428	anti-parallel
Strand 4	B	410	415	anti-parallel
Strand 5	B	388	389	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	433	438	first strand
Strand 2	B	462	467	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	447	first strand
Strand 2	B	454	455	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UPH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UPH