Analysis of interatomic Contacts of Structural Units in PDB entry:
8UPI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UPI entry

There is 1 chain in PDB entry 8UPI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 11LYS 520
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8UPI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 44Right-handed alpha
Helix 2
AA2
A
91 104Right-handed alpha
Helix 3
AA3
A
105 108Right-handed 310
Helix 4
AA4
A
111 116Right-handed 310
Helix 5
AA5
A
120 126Right-handed alpha
Helix 6
AA6
A
153 158Right-handed alpha
Helix 7
AA7
A
160 164Right-handed 310
Helix 8
AA8
A
167 175Right-handed alpha
Helix 9
AA9
A
176 181Right-handed 310
Helix 10
AB1
A
225 235Right-handed alpha
Helix 11
AB2
A
246 256Right-handed alpha
Helix 12
AB3
A
256 261Right-handed alpha
Helix 13
AB4
A
285 294Right-handed alpha
Helix 14
AB5
A
297 305Right-handed alpha
Helix 15
AB6
A
333 344Right-handed alpha
Helix 16
AB7
A
361 376Right-handed alpha
Helix 17
AB8
A
386 395Right-handed alpha
Helix 18
AB9
A
416 421Right-handed 310
Helix 19
AC1
A
426 430Right-handed 310
Helix 20
AC2
A
442 454Right-handed alpha
Helix 21
AC3
A
457 459Right-handed 310
Helix 22
AC4
A
460 479Right-handed alpha
Helix 23
AC5
A
500 504Right-handed 310
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There are 6 sheets in PDB entry 8UPI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 194first strand
Strand 2
A
198 203anti-parallel
Strand 3
A
217 222anti-parallel
Strand 4
A
14 19parallel
Strand 5
A
240 241parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
57 59anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 67first strand
Strand 2
A
73 78anti-parallel
Strand 3
A
142 146anti-parallel
Strand 4
A
135 139anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 266first strand
Strand 2
A
489 492anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
481 487anti-parallel
Strand 3
A
272 276anti-parallel
Strand 4
A
402 404anti-parallel
Strand 5
A
350 357parallel
Strand 6
A
378 385parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 498first strand
Strand 2
A
518 519anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il