Analysis of interatomic Contacts of Structural Units in PDB entry:
8UPX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UPX entry

There are 3 chains in PDB entry 8UPX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 14	ASP 1161
B	GLN 14	ASP 1161
C	GLN 14	ASP 1161

There are 57 helices in PDB entry 8UPX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	291	301	Right-handed alpha
Helix 2	AA2	A	648	653	Right-handed alpha
Helix 3	AA3	A	752	757	Right-handed alpha
Helix 4	AA4	A	762	770	Right-handed alpha
Helix 5	AA5	A	773	798	Right-handed alpha
Helix 6	AA6	A	831	840	Right-handed alpha
Helix 7	AA7	A	864	870	Right-handed alpha
Helix 8	AA8	A	883	899	Right-handed alpha
Helix 9	AA9	A	901	905	Right-handed 310
Helix 10	AB1	A	912	924	Right-handed alpha
Helix 11	AB2	A	928	955	Right-handed alpha
Helix 12	AB3	A	960	980	Right-handed alpha
Helix 13	AB4	A	991	999	Right-handed alpha
Helix 14	AB5	A	1000	1048	Right-handed alpha
Helix 15	AB6	A	1156	1161	Right-handed alpha
Helix 16	AB7	B	291	301	Right-handed alpha
Helix 17	AB8	B	336	341	Right-handed alpha
Helix 18	AB9	B	346	350	Right-handed 310
Helix 19	AC1	B	361	369	Right-handed alpha
Helix 20	AC2	B	380	385	Right-handed alpha
Helix 21	AC3	B	400	407	Right-handed 310
Helix 22	AC4	B	413	419	Right-handed alpha
Helix 23	AC5	B	475	480	Right-handed 310
Helix 24	AC6	B	557	561	Right-handed 310
Helix 25	AC7	B	752	757	Right-handed alpha
Helix 26	AC8	B	761	769	Right-handed alpha
Helix 27	AC9	B	770	772	Right-handed 310
Helix 28	AD1	B	774	798	Right-handed alpha
Helix 29	AD2	B	831	841	Right-handed alpha
Helix 30	AD3	B	864	870	Right-handed alpha
Helix 31	AD4	B	881	899	Right-handed alpha
Helix 32	AD5	B	901	905	Right-handed 310
Helix 33	AD6	B	912	925	Right-handed alpha
Helix 34	AD7	B	928	934	Right-handed alpha
Helix 35	AD8	B	934	955	Right-handed alpha
Helix 36	AD9	B	960	980	Right-handed alpha
Helix 37	AE1	B	981	983	Right-handed 310
Helix 38	AE2	B	991	997	Right-handed alpha
Helix 39	AE3	B	1000	1047	Right-handed alpha
Helix 40	AE4	B	1156	1161	Right-handed alpha
Helix 41	AE5	C	291	300	Right-handed alpha
Helix 42	AE6	C	752	758	Right-handed alpha
Helix 43	AE7	C	761	770	Right-handed alpha
Helix 44	AE8	C	775	798	Right-handed alpha
Helix 45	AE9	C	833	840	Right-handed alpha
Helix 46	AF1	C	856	860	Right-handed 310
Helix 47	AF2	C	863	870	Right-handed alpha
Helix 48	AF3	C	881	899	Right-handed alpha
Helix 49	AF4	C	901	905	Right-handed 310
Helix 50	AF5	C	912	925	Right-handed alpha
Helix 51	AF6	C	928	934	Right-handed alpha
Helix 52	AF7	C	934	953	Right-handed alpha
Helix 53	AF8	C	960	980	Right-handed alpha
Helix 54	AF9	C	981	983	Right-handed 310
Helix 55	AG1	C	991	995	Right-handed 310
Helix 56	AG2	C	1000	1048	Right-handed alpha
Helix 57	AG3	C	1156	1161	Right-handed alpha

There are 40 sheets in PDB entry 8UPX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	30	first strand
Strand 2	A	61	67	anti-parallel
Strand 3	A	260	266	anti-parallel
Strand 4	A	87	94	anti-parallel
Strand 5	A	183	192	anti-parallel
Strand 6	A	195	203	anti-parallel
Strand 7	A	221	226	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	C	580	582	parallel
Strand 3	C	588	593	anti-parallel
Strand 4	C	598	603	anti-parallel
Strand 5	C	561	569	anti-parallel
Strand 6	C	553	558	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	53	first strand
Strand 2	A	270	276	anti-parallel
Strand 3	A	282	287	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	234	240	anti-parallel
Strand 3	A	138	139	parallel
Strand 4	A	152	153	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	234	240	anti-parallel
Strand 3	A	99	105	anti-parallel
Strand 4	A	114	119	anti-parallel
Strand 5	A	124	129	anti-parallel
Strand 6	A	163	166	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	313	first strand
Strand 2	A	610	615	anti-parallel
Strand 3	A	624	627	anti-parallel
Strand 4	A	663	666	anti-parallel
Strand 5	A	657	660	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	323	first strand
Strand 2	A	553	557	parallel
Strand 3	A	562	569	anti-parallel
Strand 4	A	599	603	anti-parallel
Strand 5	A	590	592	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	669	670	first strand
Strand 2	A	706	711	parallel
Strand 3	A	685	690	anti-parallel
Strand 4	A	679	682	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	716	717	first strand
Strand 2	B	802	803	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	726	730	first strand
Strand 2	A	1087	1093	anti-parallel
Strand 3	A	1109	1112	anti-parallel
Strand 4	A	1117	1120	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	743	first strand
Strand 2	A	1074	1084	anti-parallel
Strand 3	A	1062	1071	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	749	750	first strand
Strand 2	A	874	875	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	803	first strand
Strand 2	C	716	717	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1135	1137	first strand
Strand 2	A	1102	1105	anti-parallel
Strand 3	A	1096	1097	anti-parallel
Strand 4	A	1148	1149	parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	30	first strand
Strand 2	B	61	67	anti-parallel
Strand 3	B	260	266	anti-parallel
Strand 4	B	88	94	anti-parallel
Strand 5	B	183	192	anti-parallel
Strand 6	B	195	203	anti-parallel
Strand 7	B	219	226	anti-parallel
Strand 8	B	36	37	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	55	first strand
Strand 2	B	268	276	anti-parallel
Strand 3	B	282	287	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	234	237	anti-parallel
Strand 3	B	102	105	anti-parallel
Strand 4	B	114	119	anti-parallel
Strand 5	B	124	129	anti-parallel
Strand 6	B	163	166	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	133	first strand
Strand 2	B	155	158	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	316	first strand
Strand 2	B	607	614	anti-parallel
Strand 3	B	624	627	anti-parallel
Strand 4	B	663	666	anti-parallel
Strand 5	B	657	660	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	355	first strand
Strand 2	B	391	398	anti-parallel
Strand 3	B	518	527	anti-parallel
Strand 4	B	428	435	anti-parallel
Strand 5	B	370	377	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	466	first strand
Strand 2	B	448	457	anti-parallel
Strand 3	B	504	512	anti-parallel
Strand 4	B	490	495	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	554	556	first strand
Strand 2	B	563	565	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	590	592	first strand
Strand 2	B	599	601	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	669	670	first strand
Strand 2	B	706	711	parallel
Strand 3	B	685	690	anti-parallel
Strand 4	B	679	682	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	716	719	first strand
Strand 2	C	802	805	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	726	743	first strand
Strand 2	B	1074	1091	anti-parallel
Strand 3	B	1062	1071	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	749	751	first strand
Strand 2	B	873	875	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1135	1140	first strand
Strand 2	B	1101	1105	anti-parallel
Strand 3	B	1096	1097	anti-parallel
Strand 4	B	1148	1149	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1109	1112	first strand
Strand 2	B	1117	1120	anti-parallel

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There are 8 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	61	67	anti-parallel
Strand 3	C	260	266	anti-parallel
Strand 4	C	87	94	anti-parallel
Strand 5	C	183	192	anti-parallel
Strand 6	C	195	204	anti-parallel
Strand 7	C	219	226	anti-parallel
Strand 8	C	36	37	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	55	first strand
Strand 2	C	268	276	anti-parallel
Strand 3	C	282	287	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	166	first strand
Strand 2	C	124	129	anti-parallel
Strand 3	C	114	119	anti-parallel
Strand 4	C	101	105	anti-parallel
Strand 5	C	234	238	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	152	first strand
Strand 2	C	139	143	anti-parallel
Strand 3	C	241	243	parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	314	first strand
Strand 2	C	609	614	anti-parallel
Strand 3	C	624	627	anti-parallel
Strand 4	C	663	666	anti-parallel
Strand 5	C	657	660	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	669	670	first strand
Strand 2	C	706	711	parallel
Strand 3	C	685	690	anti-parallel
Strand 4	C	679	682	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	726	730	first strand
Strand 2	C	1087	1091	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	733	743	first strand
Strand 2	C	1074	1084	anti-parallel
Strand 3	C	1062	1071	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	749	750	first strand
Strand 2	C	874	875	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1135	1137	first strand
Strand 2	C	1102	1105	anti-parallel
Strand 3	C	1096	1097	anti-parallel
Strand 4	C	1148	1149	parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1109	1112	first strand
Strand 2	C	1117	1120	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UPX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UPX