Analysis of interatomic Contacts of Structural Units in PDB entry:
8UQ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UQ8 entry

There are 2 chains in PDB entry 8UQ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1ARG 3099
a
 HIS 0ARG 3099
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8UQ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
11 15Right-handed 310
Helix 3
AA3
A
36 44Right-handed alpha
Helix 4
AA4
A
58 69Right-handed alpha
Helix 5
AA5
A
73 84Right-handed alpha
Helix 6
AA6
A
84 91Right-handed alpha
Helix 7
AA7
A
101 1016Right-handed alpha
Helix 8
AA8
A
1086 1090Right-handed 310
Helix 9
AA9
A
1098 1112Right-handed alpha
Helix 10
AB1
A
1120 1130Right-handed alpha
Helix 11
AB2
A
1130 1146Right-handed alpha
Helix 12
AB3
A
2037 2049Right-handed alpha
Helix 13
AB4
A
2055 2084Right-handed alpha
Helix 14
AB5
A
2090 2102Right-handed alpha
Helix 15
AB6
A
2103 2123Right-handed alpha
Helix 16
AB7
A
3016 3022Right-handed alpha
Helix 17
AB8
A
3026 3037Right-handed alpha
Helix 18
AB9
A
3045 3073Right-handed alpha
Helix 19
AC1
A
3079 3090Right-handed alpha
Helix 20
AC2
A
3090 3097Right-handed alpha
Helix 21
AC3
a
4 8Right-handed 310
Helix 22
AC4
a
11 15Right-handed 310
Helix 23
AC5
a
36 44Right-handed alpha
Helix 24
AC6
a
58 68Right-handed alpha
Helix 25
AC7
a
73 84Right-handed alpha
Helix 26
AC8
a
84 91Right-handed alpha
Helix 27
AC9
a
101 1016Right-handed alpha
Helix 28
AD1
a
1086 1090Right-handed 310
Helix 29
AD2
a
1098 1112Right-handed alpha
Helix 30
AD3
a
1120 1130Right-handed alpha
Helix 31
AD4
a
1130 1146Right-handed alpha
Helix 32
AD5
a
2037 2049Right-handed alpha
Helix 33
AD6
a
2055 2084Right-handed alpha
Helix 34
AD7
a
2090 2102Right-handed alpha
Helix 35
AD8
a
2103 2123Right-handed alpha
Helix 36
AD9
a
3016 3022Right-handed alpha
Helix 37
AE1
a
3026 3037Right-handed alpha
Helix 38
AE2
a
3045 3073Right-handed alpha
Helix 39
AE3
a
3079 3089Right-handed alpha
Helix 40
AE4
a
3090 3098Right-handed alpha
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There are 8 sheets in PDB entry 8UQ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
34 35anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1021 1025first strand
Strand 2
A
1032 1038anti-parallel
Strand 3
A
1049 1055anti-parallel
Strand 4
A
1066 1069anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2053 2054first strand
Strand 2
A
3077 3078parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2088 2089first strand
Strand 2
A
3042 3043parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
27 28first strand
Strand 2
a
34 35anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
1021 1025first strand
Strand 2
a
1032 1038anti-parallel
Strand 3
a
1049 1055anti-parallel
Strand 4
a
1066 1069anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
2053 2054first strand
Strand 2
a
3077 3078parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
2088 2089first strand
Strand 2
a
3042 3043parallel
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