Analysis of interatomic Contacts of Structural Units in PDB entry:
8UQA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UQA entry

There is 1 chain in PDB entry 8UQA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
K
 SER 12ALA 3103
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 8UQA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
K
37 44Right-handed alpha
Helix 2
AA2
K
58 67Right-handed alpha
Helix 3
AA3
K
73 84Right-handed alpha
Helix 4
AA4
K
84 94Right-handed alpha
Helix 5
AA5
K
101 1016Right-handed alpha
Helix 6
AA6
K
1086 1090Right-handed 310
Helix 7
AA7
K
1098 1112Right-handed alpha
Helix 8
AA8
K
1120 1130Right-handed alpha
Helix 9
AA9
K
1130 1146Right-handed alpha
Helix 10
AB1
K
2037 2049Right-handed alpha
Helix 11
AB2
K
2055 2084Right-handed alpha
Helix 12
AB3
K
2090 2102Right-handed alpha
Helix 13
AB4
K
2103 2123Right-handed alpha
Helix 14
AB5
K
3016 3022Right-handed alpha
Helix 15
AB6
K
3026 3037Right-handed alpha
Helix 16
AB7
K
3045 3073Right-handed alpha
Helix 17
AB8
K
3079 3089Right-handed alpha
Helix 18
AB9
K
3090 3098Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8UQA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
15 16first strand
Strand 2
K
21 22anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
26 28first strand
Strand 2
K
34 36anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
1021 1026first strand
Strand 2
K
1029 1038anti-parallel
Strand 3
K
1049 1055anti-parallel
Strand 4
K
1066 1069anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
2053 2054first strand
Strand 2
K
3077 3078parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
2088 2089first strand
Strand 2
K
3042 3043parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il