Analysis of interatomic Contacts of Structural Units in PDB entry:
8UQK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UQK entry

There are 2 chains in PDB entry 8UQK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 9LEU 489
A
 GLU 9LEU 489
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8UQK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
17 21Right-handed 310
Helix 2
AA2
B
44 52Right-handed alpha
Helix 3
AA3
B
54 59Right-handed alpha
Helix 4
AA4
B
62 67Right-handed alpha
Helix 5
AA5
B
68 73Right-handed alpha
Helix 6
AA6
B
74 82Right-handed alpha
Helix 7
AA7
B
122 130Right-handed alpha
Helix 8
AA8
B
138 154Right-handed alpha
Helix 9
AA9
B
194 204Right-handed alpha
Helix 10
AB1
B
242 253Right-handed alpha
Helix 11
AB2
B
283 319Right-handed alpha
Helix 12
AB3
B
319 327Right-handed alpha
Helix 13
AB4
B
332 340Right-handed alpha
Helix 14
AB5
B
340 349Right-handed alpha
Helix 15
AB6
B
369 381Right-handed alpha
Helix 16
AB7
B
393 398Right-handed alpha
Helix 17
AB8
B
399 402Right-handed 310
Helix 18
AB9
B
460 468Right-handed alpha
Helix 19
AC1
B
475 481Right-handed alpha
Helix 20
AC2
B
481 487Right-handed alpha
Helix 21
AC3
A
17 21Right-handed 310
Helix 22
AC4
A
44 52Right-handed alpha
Helix 23
AC5
A
54 59Right-handed alpha
Helix 24
AC6
A
62 67Right-handed alpha
Helix 25
AC7
A
68 73Right-handed alpha
Helix 26
AC8
A
74 82Right-handed alpha
Helix 27
AC9
A
122 130Right-handed alpha
Helix 28
AD1
A
138 154Right-handed alpha
Helix 29
AD2
A
189 193Right-handed 310
Helix 30
AD3
A
194 204Right-handed alpha
Helix 31
AD4
A
242 253Right-handed alpha
Helix 32
AD5
A
283 319Right-handed alpha
Helix 33
AD6
A
319 327Right-handed alpha
Helix 34
AD7
A
332 340Right-handed alpha
Helix 35
AD8
A
340 349Right-handed alpha
Helix 36
AD9
A
369 380Right-handed alpha
Helix 37
AE1
A
393 398Right-handed alpha
Helix 38
AE2
A
399 405Right-handed 310
Helix 39
AE3
A
460 468Right-handed alpha
Helix 40
AE4
A
475 481Right-handed alpha
Helix 41
AE5
A
481 487Right-handed alpha
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There are 6 sheets in PDB entry 8UQK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 33first strand
Strand 2
B
103 110anti-parallel
Strand 3
B
92 100anti-parallel
Strand 4
B
85 87anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
169 175anti-parallel
Strand 3
B
157 162anti-parallel
Strand 4
B
267 276anti-parallel
Strand 5
B
256 264anti-parallel
Strand 6
B
206 209anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 390first strand
Strand 2
B
410 414anti-parallel
Strand 3
B
424 428anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
103 110anti-parallel
Strand 3
A
92 100anti-parallel
Strand 4
A
85 87anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
169 176anti-parallel
Strand 3
A
157 162anti-parallel
Strand 4
A
267 276anti-parallel
Strand 5
A
256 264anti-parallel
Strand 6
A
206 209anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
423 428anti-parallel
Strand 3
A
410 415anti-parallel
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