Analysis of interatomic Contacts of Structural Units in PDB entry:
8UQN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UQN entry

There are 2 chains in PDB entry 8UQN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 38	ASN 352
B	LEU 13	ALA 878

There are 47 helices in PDB entry 8UQN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	63	Right-handed alpha
Helix 2	AA2	A	68	74	Right-handed alpha
Helix 3	AA3	A	75	97	Right-handed alpha
Helix 4	AA4	A	103	108	Right-handed alpha
Helix 5	AA5	A	109	114	Right-handed alpha
Helix 6	AA6	A	125	137	Right-handed alpha
Helix 7	AA7	A	138	147	Right-handed alpha
Helix 8	AA8	A	148	151	Right-handed 310
Helix 9	AA9	A	156	161	Right-handed alpha
Helix 10	AB1	A	163	168	Right-handed alpha
Helix 11	AB2	A	175	180	Right-handed alpha
Helix 12	AB3	A	215	220	Right-handed 310
Helix 13	AB4	A	233	235	Right-handed 310
Helix 14	AB5	A	247	259	Right-handed alpha
Helix 15	AB6	A	277	283	Right-handed alpha
Helix 16	AB7	A	303	315	Right-handed alpha
Helix 17	AB8	A	334	352	Right-handed alpha
Helix 18	AB9	B	20	25	Right-handed alpha
Helix 19	AC1	B	76	78	Right-handed 310
Helix 20	AC2	B	83	91	Right-handed alpha
Helix 21	AC3	B	97	101	Right-handed 310
Helix 22	AC4	B	127	139	Right-handed alpha
Helix 23	AC5	B	141	146	Right-handed alpha
Helix 24	AC6	B	148	163	Right-handed alpha
Helix 25	AC7	B	172	179	Right-handed alpha
Helix 26	AC8	B	183	193	Right-handed alpha
Helix 27	AC9	B	209	217	Right-handed alpha
Helix 28	AD1	B	225	231	Right-handed alpha
Helix 29	AD2	B	243	251	Right-handed alpha
Helix 30	AD3	B	270	274	Right-handed 310
Helix 31	AD4	B	275	280	Right-handed alpha
Helix 32	AD5	B	282	287	Right-handed alpha
Helix 33	AD6	B	292	300	Right-handed alpha
Helix 34	AD7	B	309	313	Right-handed 310
Helix 35	AD8	B	322	324	Right-handed 310
Helix 36	AD9	B	347	355	Right-handed alpha
Helix 37	AE1	B	389	399	Right-handed alpha
Helix 38	AE2	B	421	433	Right-handed alpha
Helix 39	AE3	B	434	437	Right-handed 310
Helix 40	AE4	B	605	611	Right-handed alpha
Helix 41	AE5	B	622	632	Right-handed alpha
Helix 42	AE6	B	633	641	Right-handed alpha
Helix 43	AE7	B	661	666	Right-handed alpha
Helix 44	AE8	B	680	687	Right-handed alpha
Helix 45	AE9	B	691	696	Right-handed alpha
Helix 46	AF1	B	856	861	Right-handed alpha
Helix 47	AF2	B	861	875	Right-handed alpha

There are 11 sheets in PDB entry 8UQN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	195	first strand
Strand 2	A	200	205	anti-parallel
Strand 3	A	39	45	parallel
Strand 4	A	225	231	parallel
Strand 5	A	268	274	parallel
Strand 6	A	325	328	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	51	54	anti-parallel
Strand 3	B	39	45	anti-parallel
Strand 4	B	26	30	anti-parallel
Strand 5	B	116	122	anti-parallel
Strand 6	B	103	108	anti-parallel
Strand 7	B	69	74	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	171	first strand
Strand 2	B	202	203	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	242	first strand
Strand 2	B	290	291	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	328	first strand
Strand 2	B	698	700	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	388	first strand
Strand 2	B	376	377	anti-parallel
Strand 3	B	360	366	anti-parallel
Strand 4	B	409	414	parallel
Strand 5	B	464	466	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	598	599	first strand
Strand 2	B	616	617	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	620	621	first strand
Strand 2	B	646	648	parallel
Strand 3	B	671	672	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	781	786	first strand
Strand 2	B	726	736	anti-parallel
Strand 3	B	832	842	anti-parallel
Strand 4	B	819	826	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	781	786	first strand
Strand 2	B	726	736	anti-parallel
Strand 3	B	845	846	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	762	763	first strand
Strand 2	B	745	752	anti-parallel
Strand 3	B	793	800	anti-parallel
Strand 4	B	805	812	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UQN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UQN