Analysis of interatomic Contacts of Structural Units in PDB entry:
8UQO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UQO entry

There are 6 chains in PDB entry 8UQO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLN 6	ASN 340
C	LEU 4	ASN 340
D	SER 8	LEU 51
G	ILE 9	PHE 61
A	ARG 38	ASN 352
Q	LEU 13	ALA 873

There are 57 helices in PDB entry 8UQO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	6	25	Right-handed alpha
Helix 2	AA2	B	29	34	Right-handed alpha
Helix 3	AA3	C	7	12	Right-handed alpha
Helix 4	AA4	C	12	24	Right-handed alpha
Helix 5	AA5	C	29	34	Right-handed alpha
Helix 6	AA6	C	35	37	Right-handed 310
Helix 7	AA7	D	9	19	Right-handed alpha
Helix 8	AA8	D	29	32	Right-handed 310
Helix 9	AA9	D	33	43	Right-handed alpha
Helix 10	AB1	G	10	20	Right-handed alpha
Helix 11	AB2	G	21	23	Right-handed 310
Helix 12	AB3	G	29	42	Right-handed alpha
Helix 13	AB4	A	52	63	Right-handed alpha
Helix 14	AB5	A	68	73	Right-handed alpha
Helix 15	AB6	A	75	98	Right-handed alpha
Helix 16	AB7	A	103	108	Right-handed alpha
Helix 17	AB8	A	109	115	Right-handed alpha
Helix 18	AB9	A	125	133	Right-handed alpha
Helix 19	AC1	A	138	146	Right-handed alpha
Helix 20	AC2	A	147	151	Right-handed 310
Helix 21	AC3	A	163	168	Right-handed alpha
Helix 22	AC4	A	175	180	Right-handed alpha
Helix 23	AC5	A	215	220	Right-handed 310
Helix 24	AC6	A	246	259	Right-handed alpha
Helix 25	AC7	A	260	261	Right-handed 310
Helix 26	AC8	A	262	266	Right-handed 310
Helix 27	AC9	A	277	282	Right-handed alpha
Helix 28	AD1	A	301	315	Right-handed alpha
Helix 29	AD2	A	333	349	Right-handed alpha
Helix 30	AD3	Q	76	78	Right-handed 310
Helix 31	AD4	Q	83	91	Right-handed alpha
Helix 32	AD5	Q	127	132	Right-handed alpha
Helix 33	AD6	Q	135	140	Right-handed alpha
Helix 34	AD7	Q	141	146	Right-handed alpha
Helix 35	AD8	Q	157	163	Right-handed alpha
Helix 36	AD9	Q	172	176	Right-handed alpha
Helix 37	AE1	Q	185	193	Right-handed alpha
Helix 38	AE2	Q	204	208	Right-handed 310
Helix 39	AE3	Q	209	217	Right-handed alpha
Helix 40	AE4	Q	243	253	Right-handed alpha
Helix 41	AE5	Q	275	280	Right-handed alpha
Helix 42	AE6	Q	282	287	Right-handed alpha
Helix 43	AE7	Q	293	298	Right-handed alpha
Helix 44	AE8	Q	322	324	Right-handed 310
Helix 45	AE9	Q	347	355	Right-handed alpha
Helix 46	AF1	Q	389	400	Right-handed alpha
Helix 47	AF2	Q	418	433	Right-handed alpha
Helix 48	AF3	Q	434	437	Right-handed 310
Helix 49	AF4	Q	590	594	Right-handed 310
Helix 50	AF5	Q	605	610	Right-handed alpha
Helix 51	AF6	Q	622	626	Right-handed alpha
Helix 52	AF7	Q	634	640	Right-handed alpha
Helix 53	AF8	Q	660	664	Right-handed 310
Helix 54	AF9	Q	680	686	Right-handed alpha
Helix 55	AG1	Q	691	696	Right-handed alpha
Helix 56	AG2	Q	702	706	Right-handed 310
Helix 57	AG3	Q	861	872	Right-handed alpha

There are 28 sheets in PDB entry 8UQO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	330	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	111	114	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	157	first strand
Strand 2	B	169	170	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	191	first strand
Strand 2	B	198	201	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	220	222	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	241	245	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	252	first strand
Strand 2	B	262	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	48	first strand
Strand 2	C	336	339	anti-parallel
Strand 3	C	327	330	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	72	first strand
Strand 2	C	78	83	anti-parallel
Strand 3	C	89	94	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	124	first strand
Strand 2	C	135	137	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	151	first strand
Strand 2	C	157	161	anti-parallel
Strand 3	C	166	168	anti-parallel
Strand 4	C	178	180	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	192	first strand
Strand 2	C	199	203	anti-parallel
Strand 3	C	208	210	anti-parallel
Strand 4	C	220	222	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	234	first strand
Strand 2	C	241	243	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	253	first strand
Strand 2	C	260	262	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	277	first strand
Strand 2	C	284	287	anti-parallel
Strand 3	C	296	298	anti-parallel
Strand 4	C	304	306	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	195	first strand
Strand 2	A	200	206	anti-parallel
Strand 3	A	39	45	parallel
Strand 4	A	225	231	parallel
Strand 5	A	268	274	parallel
Strand 6	A	325	327	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	26	30	first strand
Strand 2	Q	39	45	anti-parallel
Strand 3	Q	51	55	anti-parallel
Strand 4	Q	61	65	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	69	74	first strand
Strand 2	Q	103	108	anti-parallel
Strand 3	Q	119	121	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	170	171	first strand
Strand 2	Q	202	203	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	241	242	first strand
Strand 2	Q	290	291	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	326	328	first strand
Strand 2	Q	698	700	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	360	363	first strand
Strand 2	Q	408	412	parallel
Strand 3	Q	463	466	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	365	366	first strand
Strand 2	Q	376	377	anti-parallel
Strand 3	Q	387	388	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	598	599	first strand
Strand 2	Q	616	621	parallel
Strand 3	Q	644	648	parallel
Strand 4	Q	671	672	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	781	786	first strand
Strand 2	Q	726	736	anti-parallel
Strand 3	Q	837	842	anti-parallel
Strand 4	Q	819	821	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	781	786	first strand
Strand 2	Q	726	736	anti-parallel
Strand 3	Q	845	846	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	761	763	first strand
Strand 2	Q	747	752	anti-parallel
Strand 3	Q	793	799	anti-parallel
Strand 4	Q	805	812	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UQO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UQO