Analysis of interatomic Contacts of Structural Units in PDB entry:
8UQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UQQ entry

There are 2 chains in PDB entry 8UQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 9LEU 143
A
 VAL 147ASP 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 8UQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
83 88Right-handed 310
Helix 2
AA2
A
135 140Right-handed 310
Helix 3
AA3
A
147 151Right-handed 310
Helix 4
AA4
A
154 160Right-handed 310
Helix 5
AA5
A
161 166Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8UQQ.

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 21first strand
Strand 2
A
171 179anti-parallel
Strand 3
A
184 194anti-parallel
Strand 4
A
197 207anti-parallel
Strand 5
A
91 101parallel
Strand 6
A
104 115anti-parallel
Strand 7
A
120 127anti-parallel
Strand 8
A
51 61anti-parallel
Strand 9
A
33 42anti-parallel
Strand 10
A
227 234anti-parallel
Strand 11
A
239 249anti-parallel
Strand 12
A
10 21anti-parallel
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