Analysis of interatomic Contacts of Structural Units in PDB entry:
8UQV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UQV entry

There are 3 chains in PDB entry 8UQV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 40	THR 586
B	ASP 40	THR 586
C	ASP 40	SER 170

There are 74 helices in PDB entry 8UQV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	76	82	Right-handed alpha
Helix 2	AA2	A	110	114	Right-handed 310
Helix 3	AA3	A	115	128	Right-handed alpha
Helix 4	AA4	A	146	154	Right-handed alpha
Helix 5	AA5	A	158	162	Right-handed 310
Helix 6	AA6	A	215	219	Right-handed 310
Helix 7	AA7	A	223	228	Right-handed alpha
Helix 8	AA8	A	229	231	Right-handed 310
Helix 9	AA9	A	256	272	Right-handed alpha
Helix 10	AB1	A	310	321	Right-handed alpha
Helix 11	AB2	A	323	333	Right-handed alpha
Helix 12	AB3	A	361	370	Right-handed alpha
Helix 13	AB4	A	384	389	Right-handed alpha
Helix 14	AB5	A	392	406	Right-handed alpha
Helix 15	AB6	A	441	446	Right-handed 310
Helix 16	AB7	A	480	491	Right-handed alpha
Helix 17	AB8	A	544	549	Right-handed 310
Helix 18	AB9	B	67	71	Right-handed 310
Helix 19	AC1	B	74	81	Right-handed alpha
Helix 20	AC2	B	110	114	Right-handed 310
Helix 21	AC3	B	115	128	Right-handed alpha
Helix 22	AC4	B	146	152	Right-handed alpha
Helix 23	AC5	B	215	228	Right-handed alpha
Helix 24	AC6	B	229	231	Right-handed 310
Helix 25	AC7	B	239	243	Right-handed 310
Helix 26	AC8	B	256	271	Right-handed alpha
Helix 27	AC9	B	310	321	Right-handed alpha
Helix 28	AD1	B	323	332	Right-handed alpha
Helix 29	AD2	B	359	363	Right-handed 310
Helix 30	AD3	B	384	389	Right-handed alpha
Helix 31	AD4	B	392	406	Right-handed alpha
Helix 32	AD5	B	415	417	Right-handed 310
Helix 33	AD6	B	427	433	Right-handed 310
Helix 34	AD7	B	442	446	Right-handed 310
Helix 35	AD8	B	480	493	Right-handed alpha
Helix 36	AD9	B	544	549	Right-handed 310
Helix 37	AE1	C	67	71	Right-handed 310
Helix 38	AE2	C	74	81	Right-handed alpha
Helix 39	AE3	C	115	127	Right-handed alpha
Helix 40	AE4	C	146	153	Right-handed alpha
Helix 41	AE5	C	216	221	Right-handed alpha
Helix 42	AE6	C	223	228	Right-handed alpha
Helix 43	AE7	C	229	231	Right-handed 310
Helix 44	AE8	C	256	271	Right-handed alpha
Helix 45	AE9	C	284	289	Right-handed alpha
Helix 46	AF1	C	290	292	Right-handed 310
Helix 47	AF2	C	294	298	Right-handed 310
Helix 48	AF3	C	310	321	Right-handed alpha
Helix 49	AF4	C	327	331	Right-handed 310
Helix 50	AF5	C	354	358	Right-handed 310
Helix 51	AF6	C	359	364	Right-handed 310
Helix 52	AF7	C	384	389	Right-handed alpha
Helix 53	AF8	C	392	404	Right-handed alpha
Helix 54	AF9	C	442	446	Right-handed 310
Helix 55	AG1	C	480	495	Right-handed alpha
Helix 56	AG2	C	544	549	Right-handed 310
Helix 57	AG3	D	68	73	Right-handed alpha
Helix 58	AG4	D	76	82	Right-handed alpha
Helix 59	AG5	D	110	114	Right-handed 310
Helix 60	AG6	D	115	127	Right-handed alpha
Helix 61	AG7	D	146	154	Right-handed alpha
Helix 62	AG8	D	215	231	Right-handed alpha
Helix 63	AG9	D	239	243	Right-handed 310
Helix 64	AH1	D	254	271	Right-handed alpha
Helix 65	AH2	D	286	290	Right-handed 310
Helix 66	AH3	D	294	298	Right-handed 310
Helix 67	AH4	D	310	320	Right-handed alpha
Helix 68	AH5	D	323	333	Right-handed alpha
Helix 69	AH6	D	361	369	Right-handed alpha
Helix 70	AH7	D	384	390	Right-handed alpha
Helix 71	AH8	D	392	406	Right-handed alpha
Helix 72	AH9	D	441	446	Right-handed 310
Helix 73	AI1	D	480	493	Right-handed alpha
Helix 74	AI2	D	545	549	Right-handed 310

There are 16 sheets in PDB entry 8UQV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	135	first strand
Strand 2	A	85	88	parallel
Strand 3	A	49	51	parallel
Strand 4	A	410	413	parallel
Strand 5	A	344	345	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	138	first strand
Strand 2	A	237	238	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	516	first strand
Strand 2	A	530	533	anti-parallel
Strand 3	A	579	580	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	543	first strand
Strand 2	A	570	574	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	238	first strand
Strand 2	B	132	138	parallel
Strand 3	B	85	88	parallel
Strand 4	B	49	51	parallel
Strand 5	B	410	413	parallel
Strand 6	B	344	345	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	167	first strand
Strand 2	B	197	198	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	513	516	first strand
Strand 2	B	530	533	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	539	542	first strand
Strand 2	B	571	574	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	135	first strand
Strand 2	C	85	88	parallel
Strand 3	C	49	51	parallel
Strand 4	C	411	413	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	167	first strand
Strand 2	C	197	198	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	514	516	first strand
Strand 2	C	530	532	anti-parallel
Strand 3	C	579	580	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	539	542	first strand
Strand 2	C	571	574	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	238	first strand
Strand 2	D	132	138	parallel
Strand 3	D	85	88	parallel
Strand 4	D	49	51	parallel
Strand 5	D	411	413	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	189	first strand
Strand 2	D	198	199	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	504	505	first strand
Strand 2	D	513	517	anti-parallel
Strand 3	D	529	533	anti-parallel
Strand 4	D	579	582	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	539	543	first strand
Strand 2	D	570	574	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UQV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UQV