Analysis of interatomic Contacts of Structural Units in PDB entry:
8UR8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UR8 entry

There are 4 chains in PDB entry 8UR8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -1	LEU 591
B	SER -1	LEU 591
C	SER -1	LEU 591
D	SER -1	LEU 591

There are110 helices in PDB entry 8UR8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	12	Right-handed alpha
Helix 2	AA2	A	19	23	Right-handed 310
Helix 3	AA3	A	31	44	Right-handed alpha
Helix 4	AA4	A	48	50	Right-handed 310
Helix 5	AA5	A	87	94	Right-handed alpha
Helix 6	AA6	A	106	118	Right-handed alpha
Helix 7	AA7	A	143	156	Right-handed alpha
Helix 8	AA8	A	157	162	Right-handed 310
Helix 9	AA9	A	171	176	Right-handed alpha
Helix 10	AB1	A	177	187	Right-handed alpha
Helix 11	AB2	A	194	205	Right-handed alpha
Helix 12	AB3	A	206	209	Right-handed 310
Helix 13	AB4	A	224	229	Right-handed alpha
Helix 14	AB5	A	229	240	Right-handed alpha
Helix 15	AB6	A	313	324	Right-handed alpha
Helix 16	AB7	A	326	331	Right-handed 310
Helix 17	AB8	A	332	337	Right-handed alpha
Helix 18	AB9	A	354	366	Right-handed alpha
Helix 19	AC1	A	426	430	Right-handed 310
Helix 20	AC2	A	431	443	Right-handed alpha
Helix 21	AC3	A	449	457	Right-handed alpha
Helix 22	AC4	A	507	524	Right-handed alpha
Helix 23	AC5	A	534	537	Right-handed 310
Helix 24	AC6	A	538	550	Right-handed alpha
Helix 25	AC7	A	554	559	Right-handed alpha
Helix 26	AC8	A	562	576	Right-handed alpha
Helix 27	AC9	A	579	588	Right-handed alpha
Helix 28	AD1	B	7	12	Right-handed alpha
Helix 29	AD2	B	19	23	Right-handed 310
Helix 30	AD3	B	31	44	Right-handed alpha
Helix 31	AD4	B	48	50	Right-handed 310
Helix 32	AD5	B	87	94	Right-handed alpha
Helix 33	AD6	B	106	115	Right-handed alpha
Helix 34	AD7	B	143	155	Right-handed alpha
Helix 35	AD8	B	157	162	Right-handed 310
Helix 36	AD9	B	171	176	Right-handed alpha
Helix 37	AE1	B	177	187	Right-handed alpha
Helix 38	AE2	B	194	205	Right-handed alpha
Helix 39	AE3	B	206	209	Right-handed 310
Helix 40	AE4	B	224	229	Right-handed alpha
Helix 41	AE5	B	229	240	Right-handed alpha
Helix 42	AE6	B	313	326	Right-handed alpha
Helix 43	AE7	B	327	331	Right-handed 310
Helix 44	AE8	B	332	337	Right-handed alpha
Helix 45	AE9	B	354	366	Right-handed alpha
Helix 46	AF1	B	368	372	Right-handed 310
Helix 47	AF2	B	426	430	Right-handed 310
Helix 48	AF3	B	431	443	Right-handed alpha
Helix 49	AF4	B	449	456	Right-handed alpha
Helix 50	AF5	B	507	524	Right-handed alpha
Helix 51	AF6	B	534	537	Right-handed 310
Helix 52	AF7	B	538	550	Right-handed alpha
Helix 53	AF8	B	554	559	Right-handed alpha
Helix 54	AF9	B	562	576	Right-handed alpha
Helix 55	AG1	B	579	588	Right-handed alpha
Helix 56	AG2	C	7	12	Right-handed alpha
Helix 57	AG3	C	19	23	Right-handed 310
Helix 58	AG4	C	31	44	Right-handed alpha
Helix 59	AG5	C	48	50	Right-handed 310
Helix 60	AG6	C	87	94	Right-handed alpha
Helix 61	AG7	C	106	115	Right-handed alpha
Helix 62	AG8	C	143	156	Right-handed alpha
Helix 63	AG9	C	157	162	Right-handed 310
Helix 64	AH1	C	171	176	Right-handed alpha
Helix 65	AH2	C	177	187	Right-handed alpha
Helix 66	AH3	C	194	205	Right-handed alpha
Helix 67	AH4	C	206	209	Right-handed 310
Helix 68	AH5	C	224	229	Right-handed alpha
Helix 69	AH6	C	229	240	Right-handed alpha
Helix 70	AH7	C	313	326	Right-handed alpha
Helix 71	AH8	C	327	331	Right-handed 310
Helix 72	AH9	C	332	337	Right-handed alpha
Helix 73	AI1	C	354	366	Right-handed alpha
Helix 74	AI2	C	368	372	Right-handed 310
Helix 75	AI3	C	426	430	Right-handed 310
Helix 76	AI4	C	431	443	Right-handed alpha
Helix 77	AI5	C	449	456	Right-handed alpha
Helix 78	AI6	C	507	524	Right-handed alpha
Helix 79	AI7	C	534	537	Right-handed 310
Helix 80	AI8	C	538	550	Right-handed alpha
Helix 81	AI9	C	554	559	Right-handed alpha
Helix 82	AJ1	C	562	576	Right-handed alpha
Helix 83	AJ2	C	579	588	Right-handed alpha
Helix 84	AJ3	D	7	12	Right-handed alpha
Helix 85	AJ4	D	19	23	Right-handed 310
Helix 86	AJ5	D	31	44	Right-handed alpha
Helix 87	AJ6	D	48	50	Right-handed 310
Helix 88	AJ7	D	87	94	Right-handed alpha
Helix 89	AJ8	D	106	118	Right-handed alpha
Helix 90	AJ9	D	143	155	Right-handed alpha
Helix 91	AK1	D	157	162	Right-handed 310
Helix 92	AK2	D	171	176	Right-handed alpha
Helix 93	AK3	D	177	187	Right-handed alpha
Helix 94	AK4	D	194	205	Right-handed alpha
Helix 95	AK5	D	206	209	Right-handed 310
Helix 96	AK6	D	224	229	Right-handed alpha
Helix 97	AK7	D	229	240	Right-handed alpha
Helix 98	AK8	D	313	326	Right-handed alpha
Helix 99	AK9	D	327	331	Right-handed 310
Helix 100	AL1	D	332	337	Right-handed alpha
Helix 101	AL2	D	354	366	Right-handed alpha
Helix 102	AL3	D	426	430	Right-handed 310
Helix 103	AL4	D	431	443	Right-handed alpha
Helix 104	AL5	D	449	457	Right-handed alpha
Helix 105	AL6	D	507	524	Right-handed alpha
Helix 106	AL7	D	534	537	Right-handed 310
Helix 107	AL8	D	538	550	Right-handed alpha
Helix 108	AL9	D	554	559	Right-handed alpha
Helix 109	AM1	D	562	576	Right-handed alpha
Helix 110	AM2	D	579	588	Right-handed alpha

There are 18 sheets in PDB entry 8UR8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	529	530	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	245	first strand
Strand 2	A	52	55	parallel
Strand 3	A	24	28	parallel
Strand 4	A	284	289	parallel
Strand 5	A	491	494	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	133	first strand
Strand 2	A	126	128	anti-parallel
Strand 3	A	379	382	parallel
Strand 4	A	389	393	anti-parallel
Strand 5	A	407	413	anti-parallel
Strand 6	A	346	352	anti-parallel
Strand 7	A	458	464	anti-parallel
Strand 8	A	298	299	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	257	first strand
Strand 2	A	262	271	anti-parallel
Strand 3	A	274	279	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	529	530	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	245	first strand
Strand 2	B	52	55	parallel
Strand 3	B	24	28	parallel
Strand 4	B	284	289	parallel
Strand 5	B	491	494	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	218	219	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	133	first strand
Strand 2	B	126	128	anti-parallel
Strand 3	B	379	382	parallel
Strand 4	B	389	392	anti-parallel
Strand 5	B	407	413	anti-parallel
Strand 6	B	346	352	anti-parallel
Strand 7	B	458	464	anti-parallel
Strand 8	B	298	299	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	257	first strand
Strand 2	B	262	271	anti-parallel
Strand 3	B	274	279	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	529	530	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	245	first strand
Strand 2	C	52	55	parallel
Strand 3	C	24	28	parallel
Strand 4	C	284	289	parallel
Strand 5	C	491	494	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	84	first strand
Strand 2	C	218	219	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	133	first strand
Strand 2	C	126	128	anti-parallel
Strand 3	C	379	382	parallel
Strand 4	C	389	392	anti-parallel
Strand 5	C	407	413	anti-parallel
Strand 6	C	346	352	anti-parallel
Strand 7	C	458	464	anti-parallel
Strand 8	C	298	299	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	257	first strand
Strand 2	C	262	271	anti-parallel
Strand 3	C	274	279	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	4	first strand
Strand 2	D	529	530	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	245	first strand
Strand 2	D	52	55	parallel
Strand 3	D	24	28	parallel
Strand 4	D	284	289	parallel
Strand 5	D	491	494	parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	133	first strand
Strand 2	D	126	128	anti-parallel
Strand 3	D	379	382	parallel
Strand 4	D	389	393	anti-parallel
Strand 5	D	407	413	anti-parallel
Strand 6	D	346	352	anti-parallel
Strand 7	D	458	464	anti-parallel
Strand 8	D	298	299	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	257	first strand
Strand 2	D	262	271	anti-parallel
Strand 3	D	274	279	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UR8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UR8