Analysis of interatomic Contacts of Structural Units in PDB entry:
8URA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8URA entry

There are 2 chains in PDB entry 8URA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 40SER 368
B
 ALA 48LEU 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8URA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 72Right-handed 310
Helix 2
AA2
A
90 94Right-handed 310
Helix 3
AA3
A
106 110Right-handed 310
Helix 4
AA4
A
113 123Right-handed alpha
Helix 5
AA5
A
123 132Right-handed alpha
Helix 6
AA6
A
141 151Right-handed alpha
Helix 7
AA7
A
161 176Right-handed alpha
Helix 8
AA8
A
177 180Right-handed 310
Helix 9
AA9
A
191 196Right-handed alpha
Helix 10
AB1
A
196 212Right-handed alpha
Helix 11
AB2
A
218 222Right-handed 310
Helix 12
AB3
A
241 246Right-handed alpha
Helix 13
AB4
A
247 250Right-handed 310
Helix 14
AB5
A
266 278Right-handed alpha
Helix 15
AB6
A
282 284Right-handed 310
Helix 16
AB7
A
311 319Right-handed alpha
Helix 17
AB8
A
333 337Right-handed 310
Helix 18
AB9
A
342 347Right-handed 310
Helix 19
AC1
A
354 366Right-handed alpha
Helix 20
AC2
B
70 72Right-handed 310
Helix 21
AC3
B
90 94Right-handed 310
Helix 22
AC4
B
106 110Right-handed 310
Helix 23
AC5
B
113 123Right-handed alpha
Helix 24
AC6
B
123 132Right-handed alpha
Helix 25
AC7
B
141 151Right-handed alpha
Helix 26
AC8
B
161 176Right-handed alpha
Helix 27
AC9
B
177 180Right-handed 310
Helix 28
AD1
B
191 196Right-handed alpha
Helix 29
AD2
B
196 212Right-handed alpha
Helix 30
AD3
B
218 222Right-handed 310
Helix 31
AD4
B
241 246Right-handed alpha
Helix 32
AD5
B
247 250Right-handed 310
Helix 33
AD6
B
266 278Right-handed alpha
Helix 34
AD7
B
282 284Right-handed 310
Helix 35
AD8
B
311 319Right-handed alpha
Helix 36
AD9
B
333 337Right-handed 310
Helix 37
AE1
B
342 347Right-handed 310
Helix 38
AE2
B
354 366Right-handed alpha
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There are 2 sheets in PDB entry 8URA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 68first strand
Strand 2
A
100 104parallel
Strand 3
A
134 140parallel
Strand 4
A
183 188parallel
Strand 5
A
233 239parallel
Strand 6
A
256 260parallel
Strand 7
A
286 291parallel
Strand 8
A
328 332parallel
Strand 9
A
62 68parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 68first strand
Strand 2
B
100 104parallel
Strand 3
B
134 140parallel
Strand 4
B
183 188parallel
Strand 5
B
233 239parallel
Strand 6
B
256 260parallel
Strand 7
B
286 291parallel
Strand 8
B
328 332parallel
Strand 9
B
62 68parallel
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