Analysis of interatomic Contacts of Structural Units in PDB entry:
8URE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8URE entry

There are 8 chains in PDB entry 8URE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1GLY 422
B
 GLU 423GLU 448
C
 THR 1GLY 422
D
 GLU 423GLU 448
E
 THR 1GLY 422
F
 GLU 423GLU 448
G
 THR 1GLY 422
H
 GLU 423GLU 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 8URE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 29Right-handed alpha
Helix 2
AA2
A
49 68Right-handed alpha
Helix 3
AA3
A
70 96Right-handed alpha
Helix 4
AA4
A
98 115Right-handed alpha
Helix 5
AA5
A
117 134Right-handed alpha
Helix 6
AA6
A
136 154Right-handed alpha
Helix 7
AA7
A
159 176Right-handed alpha
Helix 8
AA8
A
178 195Right-handed alpha
Helix 9
AA9
A
197 224Right-handed alpha
Helix 10
AB1
A
227 248Right-handed alpha
Helix 11
AB2
A
249 267Right-handed alpha
Helix 12
AB3
A
270 290Right-handed alpha
Helix 13
AB4
A
292 316Right-handed alpha
Helix 14
AB5
A
336 355Right-handed alpha
Helix 15
AB6
A
376 400Right-handed alpha
Helix 16
AB7
A
403 421Right-handed alpha
Helix 17
AB8
B
424 447Right-handed alpha
Helix 18
AB9
C
10 28Right-handed alpha
Helix 19
AC1
C
49 68Right-handed alpha
Helix 20
AC2
C
70 96Right-handed alpha
Helix 21
AC3
C
98 115Right-handed alpha
Helix 22
AC4
C
117 134Right-handed alpha
Helix 23
AC5
C
136 155Right-handed alpha
Helix 24
AC6
C
159 176Right-handed alpha
Helix 25
AC7
C
178 195Right-handed alpha
Helix 26
AC8
C
197 224Right-handed alpha
Helix 27
AC9
C
227 247Right-handed alpha
Helix 28
AD1
C
249 267Right-handed alpha
Helix 29
AD2
C
270 289Right-handed alpha
Helix 30
AD3
C
292 316Right-handed alpha
Helix 31
AD4
C
336 355Right-handed alpha
Helix 32
AD5
C
376 400Right-handed alpha
Helix 33
AD6
C
403 422Right-handed alpha
Helix 34
AD7
D
424 446Right-handed alpha
Helix 35
AD8
E
10 28Right-handed alpha
Helix 36
AD9
E
49 68Right-handed alpha
Helix 37
AE1
E
70 93Right-handed alpha
Helix 38
AE2
E
94 96Right-handed 310
Helix 39
AE3
E
98 115Right-handed alpha
Helix 40
AE4
E
117 134Right-handed alpha
Helix 41
AE5
E
136 155Right-handed alpha
Helix 42
AE6
E
159 176Right-handed alpha
Helix 43
AE7
E
178 195Right-handed alpha
Helix 44
AE8
E
197 224Right-handed alpha
Helix 45
AE9
E
227 247Right-handed alpha
Helix 46
AF1
E
249 267Right-handed alpha
Helix 47
AF2
E
270 290Right-handed alpha
Helix 48
AF3
E
292 316Right-handed alpha
Helix 49
AF4
E
336 355Right-handed alpha
Helix 50
AF5
E
376 400Right-handed alpha
Helix 51
AF6
E
403 421Right-handed alpha
Helix 52
AF7
F
424 448Right-handed alpha
Helix 53
AF8
G
10 28Right-handed alpha
Helix 54
AF9
G
49 68Right-handed alpha
Helix 55
AG1
G
70 96Right-handed alpha
Helix 56
AG2
G
98 115Right-handed alpha
Helix 57
AG3
G
117 134Right-handed alpha
Helix 58
AG4
G
136 155Right-handed alpha
Helix 59
AG5
G
159 176Right-handed alpha
Helix 60
AG6
G
178 195Right-handed alpha
Helix 61
AG7
G
197 224Right-handed alpha
Helix 62
AG8
G
227 248Right-handed alpha
Helix 63
AG9
G
249 267Right-handed alpha
Helix 64
AH1
G
270 291Right-handed alpha
Helix 65
AH2
G
292 316Right-handed alpha
Helix 66
AH3
G
336 355Right-handed alpha
Helix 67
AH4
G
376 400Right-handed alpha
Helix 68
AH5
G
403 421Right-handed alpha
Helix 69
AH6
H
424 446Right-handed alpha
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There are 5 sheets in PDB entry 8URE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
40 45anti-parallel
Strand 3
A
32 37anti-parallel
Strand 4
G
357 363anti-parallel
Strand 5
G
366 372anti-parallel
Strand 6
G
327 333anti-parallel
Strand 7
G
319 324anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 323first strand
Strand 2
A
327 333anti-parallel
Strand 3
A
366 372anti-parallel
Strand 4
A
357 363anti-parallel
Strand 5
C
32 37anti-parallel
Strand 6
C
39 45anti-parallel
Strand 7
C
2 9anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
319 321first strand
Strand 2
C
327 333anti-parallel
Strand 3
C
366 372anti-parallel
Strand 4
C
357 363anti-parallel
Strand 5
E
32 37anti-parallel
Strand 6
E
40 45anti-parallel
Strand 7
E
2 7anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
318 320first strand
Strand 2
E
327 333anti-parallel
Strand 3
E
323 324anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
318 320first strand
Strand 2
E
327 333anti-parallel
Strand 3
E
366 372anti-parallel
Strand 4
E
357 363anti-parallel
Strand 5
G
32 37anti-parallel
Strand 6
G
39 45anti-parallel
Strand 7
G
2 9anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il