Analysis of interatomic Contacts of Structural Units in PDB entry:
8URJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8URJ entry

There are 7 chains in PDB entry 8URJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 7VAL 1056
B
 LEU 13ASN 91
C
 MET 7VAL 1056
D
 GLN 8MET 179
E
 ASP 11CYS 90
H
 GLN 8MET 179
G
 A 119 U 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are145 helices in PDB entry 8URJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 16Right-handed alpha
Helix 2
AA2
A
24 38Right-handed alpha
Helix 3
AA3
A
39 55Right-handed alpha
Helix 4
AA4
A
59 70Right-handed alpha
Helix 5
AA5
A
72 91Right-handed alpha
Helix 6
AA6
A
95 116Right-handed alpha
Helix 7
AA7
A
116 123Right-handed alpha
Helix 8
AA8
A
123 142Right-handed alpha
Helix 9
AA9
A
148 160Right-handed alpha
Helix 10
AB1
A
160 179Right-handed alpha
Helix 11
AB2
A
187 216Right-handed alpha
Helix 12
AB3
A
218 233Right-handed alpha
Helix 13
AB4
A
238 243Right-handed alpha
Helix 14
AB5
A
245 254Right-handed alpha
Helix 15
AB6
A
257 273Right-handed alpha
Helix 16
AB7
A
276 278Right-handed 310
Helix 17
AB8
A
279 298Right-handed alpha
Helix 18
AB9
A
303 311Right-handed alpha
Helix 19
AC1
A
312 339Right-handed alpha
Helix 20
AC2
A
340 342Right-handed 310
Helix 21
AC3
A
343 359Right-handed alpha
Helix 22
AC4
A
362 384Right-handed alpha
Helix 23
AC5
A
384 389Right-handed alpha
Helix 24
AC6
A
396 401Right-handed alpha
Helix 25
AC7
A
403 424Right-handed alpha
Helix 26
AC8
A
448 468Right-handed alpha
Helix 27
AC9
A
468 485Right-handed alpha
Helix 28
AD1
A
490 504Right-handed alpha
Helix 29
AD2
A
509 531Right-handed alpha
Helix 30
AD3
A
533 551Right-handed alpha
Helix 31
AD4
A
551 558Right-handed alpha
Helix 32
AD5
A
558 574Right-handed alpha
Helix 33
AD6
A
579 601Right-handed alpha
Helix 34
AD7
A
609 617Right-handed alpha
Helix 35
AD8
A
617 623Right-handed alpha
Helix 36
AD9
A
626 643Right-handed alpha
Helix 37
AE1
A
646 658Right-handed alpha
Helix 38
AE2
A
658 675Right-handed alpha
Helix 39
AE3
A
676 680Right-handed 310
Helix 40
AE4
A
681 703Right-handed alpha
Helix 41
AE5
A
705 736Right-handed alpha
Helix 42
AE6
A
737 741Right-handed 310
Helix 43
AE7
A
742 765Right-handed alpha
Helix 44
AE8
A
768 784Right-handed alpha
Helix 45
AE9
A
784 791Right-handed alpha
Helix 46
AF1
A
792 796Right-handed 310
Helix 47
AF2
A
797 812Right-handed alpha
Helix 48
AF3
A
813 817Right-handed 310
Helix 49
AF4
A
818 835Right-handed alpha
Helix 50
AF5
A
841 859Right-handed alpha
Helix 51
AF6
A
859 866Right-handed alpha
Helix 52
AF7
A
867 883Right-handed alpha
Helix 53
AF8
A
886 907Right-handed alpha
Helix 54
AF9
A
907 932Right-handed alpha
Helix 55
AG1
A
933 937Right-handed 310
Helix 56
AG2
A
938 955Right-handed alpha
Helix 57
AG3
A
969 986Right-handed alpha
Helix 58
AG4
A
990 1004Right-handed alpha
Helix 59
AG5
A
1007 1023Right-handed alpha
Helix 60
AG6
A
1030 1033Right-handed 310
Helix 61
AG7
A
1034 1056Right-handed alpha
Helix 62
AG8
B
14 26Right-handed alpha
Helix 63
AG9
B
34 62Right-handed alpha
Helix 64
AH1
B
75 86Right-handed alpha
Helix 65
AH2
C
9 16Right-handed alpha
Helix 66
AH3
C
24 38Right-handed alpha
Helix 67
AH4
C
39 56Right-handed alpha
Helix 68
AH5
C
59 70Right-handed alpha
Helix 69
AH6
C
72 91Right-handed alpha
Helix 70
AH7
C
95 116Right-handed alpha
Helix 71
AH8
C
116 123Right-handed alpha
Helix 72
AH9
C
123 142Right-handed alpha
Helix 73
AI1
C
148 160Right-handed alpha
Helix 74
AI2
C
160 180Right-handed alpha
Helix 75
AI3
C
187 201Right-handed alpha
Helix 76
AI4
C
201 216Right-handed alpha
Helix 77
AI5
C
218 233Right-handed alpha
Helix 78
AI6
C
238 243Right-handed alpha
Helix 79
AI7
C
245 254Right-handed alpha
Helix 80
AI8
C
257 273Right-handed alpha
Helix 81
AI9
C
279 298Right-handed alpha
Helix 82
AJ1
C
303 311Right-handed alpha
Helix 83
AJ2
C
312 339Right-handed alpha
Helix 84
AJ3
C
340 342Right-handed 310
Helix 85
AJ4
C
343 359Right-handed alpha
Helix 86
AJ5
C
362 380Right-handed alpha
Helix 87
AJ6
C
384 391Right-handed alpha
Helix 88
AJ7
C
396 401Right-handed alpha
Helix 89
AJ8
C
403 423Right-handed alpha
Helix 90
AJ9
C
448 468Right-handed alpha
Helix 91
AK1
C
468 485Right-handed alpha
Helix 92
AK2
C
490 504Right-handed alpha
Helix 93
AK3
C
509 531Right-handed alpha
Helix 94
AK4
C
533 551Right-handed alpha
Helix 95
AK5
C
551 557Right-handed alpha
Helix 96
AK6
C
558 574Right-handed alpha
Helix 97
AK7
C
579 601Right-handed alpha
Helix 98
AK8
C
609 622Right-handed alpha
Helix 99
AK9
C
623 625Right-handed 310
Helix 100
AL1
C
626 643Right-handed alpha
Helix 101
AL2
C
646 658Right-handed alpha
Helix 102
AL3
C
658 675Right-handed alpha
Helix 103
AL4
C
676 680Right-handed 310
Helix 104
AL5
C
681 703Right-handed alpha
Helix 105
AL6
C
706 736Right-handed alpha
Helix 106
AL7
C
737 741Right-handed 310
Helix 107
AL8
C
742 765Right-handed alpha
Helix 108
AL9
C
768 776Right-handed alpha
Helix 109
AM1
C
776 784Right-handed alpha
Helix 110
AM2
C
784 791Right-handed alpha
Helix 111
AM3
C
797 812Right-handed alpha
Helix 112
AM4
C
813 817Right-handed 310
Helix 113
AM5
C
818 835Right-handed alpha
Helix 114
AM6
C
841 859Right-handed alpha
Helix 115
AM7
C
859 866Right-handed alpha
Helix 116
AM8
C
867 883Right-handed alpha
Helix 117
AM9
C
886 907Right-handed alpha
Helix 118
AN1
C
907 932Right-handed alpha
Helix 119
AN2
C
933 937Right-handed 310
Helix 120
AN3
C
938 955Right-handed alpha
Helix 121
AN4
C
969 986Right-handed alpha
Helix 122
AN5
C
990 1004Right-handed alpha
Helix 123
AN6
C
1007 1023Right-handed alpha
Helix 124
AN7
C
1030 1033Right-handed 310
Helix 125
AN8
C
1034 1056Right-handed alpha
Helix 126
AN9
D
22 32Right-handed alpha
Helix 127
AO1
D
69 73Right-handed 310
Helix 128
AO2
D
75 81Right-handed 310
Helix 129
AO3
D
94 100Right-handed alpha
Helix 130
AO4
D
100 112Right-handed alpha
Helix 131
AO5
D
132 136Right-handed 310
Helix 132
AO6
D
137 143Right-handed alpha
Helix 133
AO7
D
158 170Right-handed alpha
Helix 134
AO8
E
12 25Right-handed alpha
Helix 135
AO9
E
34 64Right-handed alpha
Helix 136
AP1
E
64 69Right-handed alpha
Helix 137
AP2
E
69 83Right-handed alpha
Helix 138
AP3
H
22 32Right-handed alpha
Helix 139
AP4
H
69 73Right-handed 310
Helix 140
AP5
H
75 81Right-handed 310
Helix 141
AP6
H
94 100Right-handed alpha
Helix 142
AP7
H
100 112Right-handed alpha
Helix 143
AP8
H
132 136Right-handed 310
Helix 144
AP9
H
137 143Right-handed alpha
Helix 145
AQ1
H
158 170Right-handed alpha
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There are 4 sheets in PDB entry 8URJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 434first strand
Strand 2
A
440 444anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
430 434first strand
Strand 2
C
440 444anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
145 148first strand
Strand 2
D
117 122parallel
Strand 3
D
85 91parallel
Strand 4
D
10 16parallel
Strand 5
D
57 66parallel
Strand 6
D
45 54anti-parallel
Strand 7
D
176 177anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
145 148first strand
Strand 2
H
117 122parallel
Strand 3
H
85 91parallel
Strand 4
H
10 17parallel
Strand 5
H
57 66parallel
Strand 6
H
45 54anti-parallel
Strand 7
H
176 177anti-parallel
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