Analysis of interatomic Contacts of Structural Units in PDB entry:
8URL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8URL entry

There is 1 chain in PDB entry 8URL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 358ASN 803
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 3 helices in PDB entry 8URL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
371 375Right-handed 310
Helix 2
AA2
A
470 474Right-handed 310
Helix 3
AA3
A
796 802Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 8URL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 368first strand
Strand 2
A
790 795anti-parallel
Strand 3
A
778 783anti-parallel
Strand 4
A
768 772anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 385first strand
Strand 2
A
391 398anti-parallel
Strand 3
A
410 417anti-parallel
Strand 4
A
427 430anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
566 567first strand
Strand 2
A
549 555anti-parallel
Strand 3
A
453 465anti-parallel
Strand 4
A
437 450anti-parallel
Strand 5
A
585 586parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 483first strand
Strand 2
A
486 493anti-parallel
Strand 3
A
498 501anti-parallel
Strand 4
A
506 508anti-parallel
Strand 5
A
514 519anti-parallel
Strand 6
A
524 527anti-parallel
Strand 7
A
530 534anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 483first strand
Strand 2
A
486 493anti-parallel
Strand 3
A
542 544anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 582first strand
Strand 2
A
599 606anti-parallel
Strand 3
A
588 589anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 582first strand
Strand 2
A
599 606anti-parallel
Strand 3
A
612 619anti-parallel
Strand 4
A
627 628anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
649 656first strand
Strand 2
A
662 668anti-parallel
Strand 3
A
672 678anti-parallel
Strand 4
A
691 696anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
703 711first strand
Strand 2
A
714 722anti-parallel
Strand 3
A
728 739anti-parallel
Strand 4
A
750 764anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il