Analysis of interatomic Contacts of Structural Units in PDB entry:
8URO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8URO entry

There are 6 chains in PDB entry 8URO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 36	LEU 369
B	GLY 237	LEU 443
C	PRO 238	LEU 443
D	LEU 36	LEU 369
E	GLY 236	LEU 441
F	SER 239	LEU 443

There are 55 helices in PDB entry 8URO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	70	72	Right-handed 310
Helix 2	AA2	A	90	94	Right-handed 310
Helix 3	AA3	A	106	110	Right-handed 310
Helix 4	AA4	A	113	123	Right-handed alpha
Helix 5	AA5	A	123	132	Right-handed alpha
Helix 6	AA6	A	141	151	Right-handed alpha
Helix 7	AA7	A	162	176	Right-handed alpha
Helix 8	AA8	A	177	180	Right-handed 310
Helix 9	AA9	A	190	196	Right-handed alpha
Helix 10	AB1	A	196	212	Right-handed alpha
Helix 11	AB2	A	218	222	Right-handed 310
Helix 12	AB3	A	241	246	Right-handed alpha
Helix 13	AB4	A	247	250	Right-handed 310
Helix 14	AB5	A	266	278	Right-handed alpha
Helix 15	AB6	A	282	284	Right-handed 310
Helix 16	AB7	A	311	319	Right-handed alpha
Helix 17	AB8	A	333	337	Right-handed 310
Helix 18	AB9	A	342	347	Right-handed 310
Helix 19	AC1	A	354	366	Right-handed alpha
Helix 20	AC2	B	246	252	Right-handed alpha
Helix 21	AC3	B	309	315	Right-handed alpha
Helix 22	AC4	B	354	359	Right-handed 310
Helix 23	AC5	B	416	420	Right-handed 310
Helix 24	AC6	B	432	436	Right-handed 310
Helix 25	AC7	C	246	252	Right-handed alpha
Helix 26	AC8	C	309	315	Right-handed alpha
Helix 27	AC9	C	354	359	Right-handed 310
Helix 28	AD1	C	432	436	Right-handed 310
Helix 29	AD2	D	70	72	Right-handed 310
Helix 30	AD3	D	90	94	Right-handed 310
Helix 31	AD4	D	106	110	Right-handed 310
Helix 32	AD5	D	113	123	Right-handed alpha
Helix 33	AD6	D	123	132	Right-handed alpha
Helix 34	AD7	D	141	151	Right-handed alpha
Helix 35	AD8	D	161	176	Right-handed alpha
Helix 36	AD9	D	177	180	Right-handed 310
Helix 37	AE1	D	190	196	Right-handed alpha
Helix 38	AE2	D	196	212	Right-handed alpha
Helix 39	AE3	D	218	222	Right-handed 310
Helix 40	AE4	D	241	246	Right-handed alpha
Helix 41	AE5	D	247	250	Right-handed 310
Helix 42	AE6	D	266	278	Right-handed alpha
Helix 43	AE7	D	282	284	Right-handed 310
Helix 44	AE8	D	311	319	Right-handed alpha
Helix 45	AE9	D	333	337	Right-handed 310
Helix 46	AF1	D	342	346	Right-handed 310
Helix 47	AF2	D	354	366	Right-handed alpha
Helix 48	AF3	E	246	252	Right-handed alpha
Helix 49	AF4	E	309	315	Right-handed alpha
Helix 50	AF5	E	354	359	Right-handed 310
Helix 51	AF6	E	416	420	Right-handed 310
Helix 52	AF7	E	432	436	Right-handed 310
Helix 53	AF8	F	246	252	Right-handed alpha
Helix 54	AF9	F	310	316	Right-handed alpha
Helix 55	AG1	F	355	359	Right-handed 310

There are 19 sheets in PDB entry 8URO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	68	first strand
Strand 2	A	100	104	parallel
Strand 3	A	134	140	parallel
Strand 4	A	183	188	parallel
Strand 5	A	233	239	parallel
Strand 6	A	256	260	parallel
Strand 7	A	286	291	parallel
Strand 8	A	328	332	parallel
Strand 9	A	62	68	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	243	first strand
Strand 2	B	258	264	anti-parallel
Strand 3	B	302	307	anti-parallel
Strand 4	B	287	288	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	284	first strand
Strand 2	B	274	279	anti-parallel
Strand 3	B	319	324	anti-parallel
Strand 4	B	332	336	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	351	first strand
Strand 2	B	364	372	anti-parallel
Strand 3	B	404	411	anti-parallel
Strand 4	B	391	393	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	351	first strand
Strand 2	B	364	372	anti-parallel
Strand 3	B	404	411	anti-parallel
Strand 4	B	397	398	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	388	first strand
Strand 2	B	378	383	anti-parallel
Strand 3	B	424	428	anti-parallel
Strand 4	B	437	440	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	259	first strand
Strand 2	C	306	307	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	351	first strand
Strand 2	C	366	372	anti-parallel
Strand 3	C	404	409	anti-parallel
Strand 4	C	392	393	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	351	first strand
Strand 2	C	366	372	anti-parallel
Strand 3	C	404	409	anti-parallel
Strand 4	C	397	398	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	378	382	first strand
Strand 2	C	423	428	anti-parallel
Strand 3	C	437	441	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	68	first strand
Strand 2	D	100	104	parallel
Strand 3	D	134	140	parallel
Strand 4	D	183	188	parallel
Strand 5	D	233	238	parallel
Strand 6	D	256	259	parallel
Strand 7	D	286	291	parallel
Strand 8	D	328	332	parallel
Strand 9	D	62	68	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	239	243	first strand
Strand 2	E	258	266	anti-parallel
Strand 3	E	299	307	anti-parallel
Strand 4	E	288	289	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	239	243	first strand
Strand 2	E	258	266	anti-parallel
Strand 3	E	299	307	anti-parallel
Strand 4	E	294	295	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	282	284	first strand
Strand 2	E	274	279	anti-parallel
Strand 3	E	319	324	anti-parallel
Strand 4	E	332	336	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	347	351	first strand
Strand 2	E	363	372	anti-parallel
Strand 3	E	404	412	anti-parallel
Strand 4	E	391	393	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	347	351	first strand
Strand 2	E	363	372	anti-parallel
Strand 3	E	404	412	anti-parallel
Strand 4	E	397	398	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	386	388	first strand
Strand 2	E	378	383	anti-parallel
Strand 3	E	423	428	anti-parallel
Strand 4	E	437	441	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	349	351	first strand
Strand 2	F	362	369	anti-parallel
Strand 3	F	406	413	anti-parallel
Strand 4	F	391	393	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	423	426	first strand
Strand 2	F	438	441	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8URO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8URO