Analysis of interatomic Contacts of Structural Units in PDB entry:
8URQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8URQ entry

There are 5 chains in PDB entry 8URQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 ASN 9ASN 58
B
 ALA 2PRO 258
A
 ALA 2LYS 398
C
 ALA 7ALA 394
D
 A 39 C 71
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8URQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
13 21Right-handed alpha
Helix 2
AA2
F
25 29Right-handed 310
Helix 3
AA3
F
42 58Right-handed alpha
Helix 4
AA4
B
75 86Right-handed alpha
Helix 5
AA5
B
87 94Right-handed alpha
Helix 6
AA6
B
119 134Right-handed alpha
Helix 7
AA7
B
168 173Right-handed alpha
Helix 8
AA8
B
177 183Right-handed alpha
Helix 9
AA9
B
193 204Right-handed alpha
Helix 10
AB1
B
205 207Right-handed 310
Helix 11
AB2
B
208 213Right-handed alpha
Helix 12
AB3
B
220 231Right-handed alpha
Helix 13
AB4
B
236 241Right-handed alpha
Helix 14
AB5
A
41 62Right-handed alpha
Helix 15
AB6
A
104 122Right-handed alpha
Helix 16
AB7
A
130 137Right-handed alpha
Helix 17
AB8
A
137 142Right-handed alpha
Helix 18
AB9
A
143 155Right-handed alpha
Helix 19
AC1
A
156 159Right-handed 310
Helix 20
AC2
A
235 245Right-handed alpha
Helix 21
AC3
A
262 277Right-handed alpha
Helix 22
AC4
A
292 302Right-handed alpha
Helix 23
AC5
A
320 328Right-handed alpha
Helix 24
AC6
A
350 355Right-handed alpha
Helix 25
AC7
A
368 382Right-handed alpha
Helix 26
AC8
C
50 55Right-handed 310
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There are 15 sheets in PDB entry 8URQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 52first strand
Strand 2
B
142 150parallel
Strand 3
B
58 60parallel
Strand 4
B
111 115anti-parallel
Strand 5
B
97 99anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
67 70parallel
Strand 3
A
88 90anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
168 169parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
208 209anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
284 285parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 340first strand
Strand 2
A
383 384anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
387 389anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 40first strand
Strand 2
C
56 59anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
65 72first strand
Strand 2
C
82 88anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
96 99first strand
Strand 2
C
108 111anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 130first strand
Strand 2
C
140 144anti-parallel
Strand 3
C
150 155anti-parallel
Strand 4
C
173 178anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
210 211first strand
Strand 2
C
221 222anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
236 241first strand
Strand 2
C
248 252anti-parallel
Strand 3
C
259 263anti-parallel
Strand 4
C
270 274anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
294 298first strand
Strand 2
C
306 310anti-parallel
Strand 3
C
317 318anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
357 362first strand
Strand 2
C
379 383anti-parallel
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