Analysis of interatomic Contacts of Structural Units in PDB entry:
8URT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8URT entry

There are 2 chains in PDB entry 8URT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2LYS 388
B
 GLY 2LYS 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8URT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 14Right-handed 310
Helix 2
AA2
A
24 30Right-handed alpha
Helix 3
AA3
A
30 39Right-handed alpha
Helix 4
AA4
A
47 70Right-handed alpha
Helix 5
AA5
A
79 106Right-handed alpha
Helix 6
AA6
A
110 137Right-handed alpha
Helix 7
AA7
A
141 165Right-handed alpha
Helix 8
AA8
A
177 193Right-handed alpha
Helix 9
AA9
A
194 200Right-handed alpha
Helix 10
AB1
A
217 250Right-handed alpha
Helix 11
AB2
A
256 267Right-handed alpha
Helix 12
AB3
A
268 285Right-handed alpha
Helix 13
AB4
A
286 289Right-handed 310
Helix 14
AB5
A
290 314Right-handed alpha
Helix 15
AB6
A
322 325Right-handed 310
Helix 16
AB7
A
326 341Right-handed alpha
Helix 17
AB8
A
349 381Right-handed alpha
Helix 18
AB9
B
6 15Right-handed 310
Helix 19
AC1
B
24 30Right-handed alpha
Helix 20
AC2
B
30 39Right-handed alpha
Helix 21
AC3
B
40 42Right-handed 310
Helix 22
AC4
B
50 70Right-handed alpha
Helix 23
AC5
B
78 107Right-handed alpha
Helix 24
AC6
B
110 137Right-handed alpha
Helix 25
AC7
B
141 166Right-handed alpha
Helix 26
AC8
B
175 193Right-handed alpha
Helix 27
AC9
B
194 199Right-handed alpha
Helix 28
AD1
B
217 252Right-handed alpha
Helix 29
AD2
B
253 266Right-handed alpha
Helix 30
AD3
B
268 285Right-handed alpha
Helix 31
AD4
B
286 289Right-handed 310
Helix 32
AD5
B
290 315Right-handed alpha
Helix 33
AD6
B
322 325Right-handed 310
Helix 34
AD7
B
326 341Right-handed alpha
Helix 35
AD8
B
345 381Right-handed alpha
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There are 3 sheets in PDB entry 8URT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
168 170parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 204first strand
Strand 2
A
215 216anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 205first strand
Strand 2
B
214 216anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il