Analysis of interatomic Contacts of Structural Units in PDB entry:
8URU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8URU entry

There are 5 chains in PDB entry 8URU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LYS 398
B	ALA 2	PRO 258
C	PHE 5	ALA 394
F	THR 8	ASN 58
D	A 2	C 48

There are 27 helices in PDB entry 8URU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	21	Right-handed alpha
Helix 2	AA2	A	41	62	Right-handed alpha
Helix 3	AA3	A	104	122	Right-handed alpha
Helix 4	AA4	A	130	137	Right-handed alpha
Helix 5	AA5	A	137	142	Right-handed alpha
Helix 6	AA6	A	143	158	Right-handed alpha
Helix 7	AA7	A	237	245	Right-handed alpha
Helix 8	AA8	A	262	276	Right-handed alpha
Helix 9	AA9	A	290	302	Right-handed alpha
Helix 10	AB1	A	320	328	Right-handed 310
Helix 11	AB2	A	342	355	Right-handed alpha
Helix 12	AB3	A	368	382	Right-handed alpha
Helix 13	AB4	B	75	87	Right-handed alpha
Helix 14	AB5	B	87	93	Right-handed alpha
Helix 15	AB6	B	119	127	Right-handed alpha
Helix 16	AB7	B	129	134	Right-handed alpha
Helix 17	AB8	B	167	183	Right-handed alpha
Helix 18	AB9	B	188	193	Right-handed alpha
Helix 19	AC1	B	196	204	Right-handed alpha
Helix 20	AC2	B	206	213	Right-handed alpha
Helix 21	AC3	B	224	229	Right-handed alpha
Helix 22	AC4	B	235	242	Right-handed alpha
Helix 23	AC5	C	332	336	Right-handed 310
Helix 24	AC6	C	338	342	Right-handed 310
Helix 25	AC7	F	13	21	Right-handed alpha
Helix 26	AC8	F	26	32	Right-handed alpha
Helix 27	AC9	F	42	58	Right-handed alpha

There are 14 sheets in PDB entry 8URU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	28	first strand
Strand 2	A	67	72	parallel
Strand 3	A	86	90	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	168	169	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	176	first strand
Strand 2	A	208	209	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	218	219	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	315	316	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	34	36	anti-parallel
Strand 3	B	144	149	anti-parallel
Strand 4	B	48	49	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	97	99	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	388	392	anti-parallel
Strand 3	C	378	383	anti-parallel
Strand 4	C	357	363	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	41	first strand
Strand 2	C	55	59	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	72	first strand
Strand 2	C	82	86	anti-parallel
Strand 3	C	94	99	anti-parallel
Strand 4	C	108	110	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	130	first strand
Strand 2	C	140	145	anti-parallel
Strand 3	C	150	156	anti-parallel
Strand 4	C	172	175	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	202	first strand
Strand 2	C	210	213	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	254	first strand
Strand 2	C	257	261	anti-parallel
Strand 3	C	273	274	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	296	first strand
Strand 2	C	305	310	anti-parallel
Strand 3	C	314	319	anti-parallel
Strand 4	C	325	330	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8URU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8URU