Analysis of interatomic Contacts of Structural Units in PDB entry:
8URW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8URW entry

There are 10 chains in PDB entry 8URW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 227
B	MET 1	SER 227
C	ALA 10	SER 1089
D	GLU 5	HIS 624
E	PHE 5	ASN 69
Z	GLU 3	LYS 1237
G	GLU 19	LYS 138
N	G 1	C 40
T	G 1	C 40
R	A 7	A 20

There are103 helices in PDB entry 8URW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	46	Right-handed alpha
Helix 2	AA2	A	73	83	Right-handed alpha
Helix 3	AA3	A	109	111	Right-handed 310
Helix 4	AA4	A	204	221	Right-handed alpha
Helix 5	AA5	A	222	224	Right-handed 310
Helix 6	AA6	B	30	46	Right-handed alpha
Helix 7	AA7	B	73	82	Right-handed alpha
Helix 8	AA8	B	109	111	Right-handed 310
Helix 9	AA9	B	204	221	Right-handed alpha
Helix 10	AB1	B	222	224	Right-handed 310
Helix 11	AB2	C	18	38	Right-handed alpha
Helix 12	AB3	C	67	74	Right-handed alpha
Helix 13	AB4	C	182	189	Right-handed alpha
Helix 14	AB5	C	192	199	Right-handed alpha
Helix 15	AB6	C	202	214	Right-handed alpha
Helix 16	AB7	C	217	230	Right-handed alpha
Helix 17	AB8	C	236	249	Right-handed alpha
Helix 18	AB9	C	256	269	Right-handed alpha
Helix 19	AC1	C	280	296	Right-handed alpha
Helix 20	AC2	C	308	310	Right-handed 310
Helix 21	AC3	C	316	343	Right-handed alpha
Helix 22	AC4	C	349	354	Right-handed 310
Helix 23	AC5	C	356	369	Right-handed alpha
Helix 24	AC6	C	380	388	Right-handed alpha
Helix 25	AC7	C	406	410	Right-handed 310
Helix 26	AC8	C	412	416	Right-handed 310
Helix 27	AC9	C	526	531	Right-handed 310
Helix 28	AD1	C	533	537	Right-handed 310
Helix 29	AD2	C	538	550	Right-handed alpha
Helix 30	AD3	C	567	574	Right-handed alpha
Helix 31	AD4	C	676	681	Right-handed alpha
Helix 32	AD5	C	714	718	Right-handed 310
Helix 33	AD6	C	752	763	Right-handed alpha
Helix 34	AD7	C	857	863	Right-handed alpha
Helix 35	AD8	C	865	881	Right-handed alpha
Helix 36	AD9	C	889	894	Right-handed 310
Helix 37	AE1	C	896	914	Right-handed alpha
Helix 38	AE2	C	915	919	Right-handed 310
Helix 39	AE3	C	955	959	Right-handed 310
Helix 40	AE4	C	978	982	Right-handed 310
Helix 41	AE5	C	988	999	Right-handed alpha
Helix 42	AE6	C	1000	1009	Right-handed alpha
Helix 43	AE7	C	1016	1028	Right-handed alpha
Helix 44	AE8	C	1037	1049	Right-handed alpha
Helix 45	AE9	D	17	25	Right-handed alpha
Helix 46	AF1	D	58	63	Right-handed alpha
Helix 47	AF2	D	94	100	Right-handed 310
Helix 48	AF3	D	122	129	Right-handed alpha
Helix 49	AF4	D	131	139	Right-handed alpha
Helix 50	AF5	D	162	174	Right-handed alpha
Helix 51	AF6	D	191	198	Right-handed alpha
Helix 52	AF7	D	200	214	Right-handed alpha
Helix 53	AF8	D	217	236	Right-handed alpha
Helix 54	AF9	D	239	242	Right-handed 310
Helix 55	AG1	D	252	256	Right-handed 310
Helix 56	AG2	D	269	291	Right-handed alpha
Helix 57	AG3	D	297	314	Right-handed alpha
Helix 58	AG4	D	333	337	Right-handed 310
Helix 59	AG5	D	342	348	Right-handed alpha
Helix 60	AG6	D	376	383	Right-handed alpha
Helix 61	AG7	D	383	394	Right-handed alpha
Helix 62	AG8	D	399	410	Right-handed alpha
Helix 63	AG9	D	412	422	Right-handed alpha
Helix 64	AH1	D	436	438	Right-handed 310
Helix 65	AH2	D	456	458	Right-handed 310
Helix 66	AH3	D	459	464	Right-handed alpha
Helix 67	AH4	D	479	490	Right-handed alpha
Helix 68	AH5	D	510	520	Right-handed alpha
Helix 69	AH6	D	537	546	Right-handed alpha
Helix 70	AH7	D	608	622	Right-handed alpha
Helix 71	AH8	E	8	22	Right-handed alpha
Helix 72	AH9	E	25	47	Right-handed alpha
Helix 73	AI1	E	55	69	Right-handed alpha
Helix 74	AI2	Z	16	31	Right-handed alpha
Helix 75	AI3	Z	34	55	Right-handed alpha
Helix 76	AI4	Z	68	90	Right-handed alpha
Helix 77	AI5	Z	93	124	Right-handed alpha
Helix 78	AI6	Z	127	134	Right-handed alpha
Helix 79	AI7	Z	140	149	Right-handed alpha
Helix 80	AI8	Z	175	194	Right-handed alpha
Helix 81	AI9	Z	196	211	Right-handed alpha
Helix 82	AJ1	Z	241	246	Right-handed alpha
Helix 83	AJ2	Z	272	282	Right-handed alpha
Helix 84	AJ3	Z	291	295	Right-handed 310
Helix 85	AJ4	Z	302	307	Right-handed alpha
Helix 86	AJ5	Z	321	331	Right-handed alpha
Helix 87	AJ6	Z	331	339	Right-handed alpha
Helix 88	AJ7	Z	340	345	Right-handed 310
Helix 89	AJ8	Z	990	993	Right-handed 310
Helix 90	AJ9	Z	994	1003	Right-handed alpha
Helix 91	AK1	Z	1025	1029	Right-handed 310
Helix 92	AK2	Z	1072	1088	Right-handed alpha
Helix 93	AK3	Z	1091	1117	Right-handed alpha
Helix 94	AK4	Z	1122	1132	Right-handed alpha
Helix 95	AK5	Z	1155	1166	Right-handed alpha
Helix 96	AK6	Z	1181	1187	Right-handed alpha
Helix 97	AK7	Z	1191	1197	Right-handed alpha
Helix 98	AK8	Z	1200	1212	Right-handed alpha
Helix 99	AK9	Z	1222	1227	Right-handed alpha
Helix 100	AL1	Z	1232	1236	Right-handed 310
Helix 101	AL2	G	32	47	Right-handed alpha
Helix 102	AL3	G	91	100	Right-handed alpha
Helix 103	AL4	G	129	137	Right-handed alpha

There are 50 sheets in PDB entry 8URW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	12	first strand
Strand 2	A	18	27	anti-parallel
Strand 3	A	191	199	anti-parallel
Strand 4	A	172	181	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	101	first strand
Strand 2	A	134	144	anti-parallel
Strand 3	A	49	57	anti-parallel
Strand 4	A	163	164	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	88	first strand
Strand 2	A	117	119	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	107	first strand
Strand 2	A	125	129	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	148	first strand
Strand 2	A	167	169	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	12	first strand
Strand 2	B	18	27	anti-parallel
Strand 3	B	191	199	anti-parallel
Strand 4	B	172	181	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	101	first strand
Strand 2	B	134	144	anti-parallel
Strand 3	B	49	58	anti-parallel
Strand 4	B	163	164	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	B	118	119	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	107	first strand
Strand 2	B	125	128	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	148	first strand
Strand 2	B	167	169	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	54	first strand
Strand 2	C	79	88	anti-parallel
Strand 3	C	60	61	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	54	first strand
Strand 2	C	79	88	anti-parallel
Strand 3	C	100	107	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	117	first strand
Strand 2	C	120	124	anti-parallel
Strand 3	C	373	375	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	315	first strand
Strand 2	C	126	130	anti-parallel
Strand 3	C	390	392	parallel
Strand 4	C	433	435	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	141	first strand
Strand 2	C	144	153	anti-parallel
Strand 3	C	160	164	anti-parallel
Strand 4	C	170	174	anti-parallel
Strand 5	C	180	181	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	441	442	first strand
Strand 2	C	448	456	anti-parallel
Strand 3	C	467	469	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	459	460	first strand
Strand 2	C	448	456	anti-parallel
Strand 3	C	515	517	anti-parallel
Strand 4	C	479	480	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	497	501	first strand
Strand 2	C	504	508	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	579	580	first strand
Strand 2	C	638	641	anti-parallel
Strand 3	C	624	625	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	585	591	first strand
Strand 2	C	594	599	anti-parallel
Strand 3	C	604	608	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	613	614	first strand
Strand 2	C	620	621	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	926	927	first strand
Strand 2	C	942	951	anti-parallel
Strand 3	C	821	823	anti-parallel
Strand 4	C	829	836	anti-parallel
Strand 5	C	671	675	parallel
Strand 6	C	852	854	anti-parallel
Strand 7	C	654	660	parallel
Strand 8	C	942	951	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	686	697	first strand
Strand 2	C	802	814	anti-parallel
Strand 3	C	782	791	anti-parallel
Strand 4	C	732	733	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	705	706	first strand
Strand 2	C	742	745	anti-parallel
Strand 3	C	769	771	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	721	722	first strand
Strand 2	C	726	727	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	738	740	first strand
Strand 2	C	774	775	anti-parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	961	963	first strand
Strand 2	D	356	363	anti-parallel
Strand 3	D	471	475	anti-parallel
Strand 4	D	427	430	anti-parallel
Strand 5	D	440	448	anti-parallel
Strand 6	D	371	375	parallel
Strand 7	D	453	455	anti-parallel
Strand 8	D	356	363	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	985	987	first strand
Strand 2	D	351	353	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1068	1069	first strand
Strand 2	C	1052	1058	anti-parallel
Strand 3	D	10	15	anti-parallel
Strand 4	Z	1214	1215	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	28	first strand
Strand 2	D	34	35	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	112	first strand
Strand 2	D	244	250	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	161	first strand
Strand 2	D	144	148	anti-parallel
Strand 3	D	185	186	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	533	534	first strand
Strand 2	D	555	558	parallel
Strand 3	D	600	607	anti-parallel
Strand 4	D	590	594	anti-parallel
Strand 5	D	582	586	anti-parallel
Strand 6	D	574	578	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	563	565	first strand
Strand 2	Z	10	12	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	227	229	first strand
Strand 2	Z	287	289	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	232	234	first strand
Strand 2	Z	237	240	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	255	256	first strand
Strand 2	Z	263	265	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	354	357	first strand
Strand 2	Z	424	428	anti-parallel
Strand 3	Z	410	411	anti-parallel
Strand 4	Z	382	386	anti-parallel
Strand 5	Z	372	376	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	400	405	first strand
Strand 2	Z	390	395	anti-parallel
Strand 3	Z	362	364	anti-parallel
Strand 4	Z	418	419	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	441	446	first strand
Strand 2	Z	977	983	anti-parallel
Strand 3	Z	963	964	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	903	906	first strand
Strand 2	Z	948	958	anti-parallel
Strand 3	Z	938	943	anti-parallel
Strand 4	Z	921	922	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	903	906	first strand
Strand 2	Z	948	958	anti-parallel
Strand 3	Z	478	484	anti-parallel
Strand 4	Z	451	455	anti-parallel
Strand 5	Z	971	972	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	459	464	first strand
Strand 2	Z	470	476	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	486	489	first strand
Strand 2	Z	894	898	anti-parallel
Strand 3	Z	880	883	anti-parallel
Strand 4	Z	503	504	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	495	496	first strand
Strand 2	Z	509	512	anti-parallel
Strand 3	Z	873	875	anti-parallel
Strand 4	Z	850	851	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	1020	1021	first strand
Strand 2	Z	1031	1034	anti-parallel
Strand 3	Z	1044	1045	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	1152	1154	first strand
Strand 2	Z	1136	1140	anti-parallel
Strand 3	Z	1174	1177	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	57	first strand
Strand 2	G	83	88	anti-parallel
Strand 3	G	22	28	anti-parallel
Strand 4	G	104	107	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	60	63	first strand
Strand 2	G	75	78	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	109	110	first strand
Strand 2	G	124	125	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8URW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8URW