Analysis of interatomic Contacts of Structural Units in PDB entry:
8US2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8US2 entry

There are 2 chains in PDB entry 8US2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 25	LEU 579
B	PRO 104	LEU 579

There are 16 helices in PDB entry 8US2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	48	Right-handed alpha
Helix 2	AA2	A	54	76	Right-handed alpha
Helix 3	AA3	A	116	121	Right-handed 310
Helix 4	AA4	A	129	133	Right-handed 310
Helix 5	AA5	A	139	157	Right-handed alpha
Helix 6	AA6	A	204	210	Right-handed alpha
Helix 7	AA7	A	221	235	Right-handed alpha
Helix 8	AA8	A	462	466	Right-handed 310
Helix 9	AA9	A	467	471	Right-handed 310
Helix 10	AB1	B	116	121	Right-handed 310
Helix 11	AB2	B	129	133	Right-handed 310
Helix 12	AB3	B	140	157	Right-handed alpha
Helix 13	AB4	B	204	210	Right-handed alpha
Helix 14	AB5	B	221	235	Right-handed alpha
Helix 15	AB6	B	462	466	Right-handed 310
Helix 16	AB7	B	467	471	Right-handed 310

There are 8 sheets in PDB entry 8US2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	32	first strand
Strand 2	A	94	100	parallel
Strand 3	A	82	88	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	115	first strand
Strand 2	A	177	185	parallel
Strand 3	A	163	172	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	199	first strand
Strand 2	A	258	267	parallel
Strand 3	A	238	244	anti-parallel

Back to list of sheets
Back to top of page

There are 16 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	280	first strand
Strand 2	A	284	293	anti-parallel
Strand 3	A	302	310	anti-parallel
Strand 4	A	313	323	anti-parallel
Strand 5	A	330	343	anti-parallel
Strand 6	A	346	360	anti-parallel
Strand 7	A	365	380	anti-parallel
Strand 8	A	383	401	anti-parallel
Strand 9	A	410	420	anti-parallel
Strand 10	A	430	443	anti-parallel
Strand 11	A	447	459	anti-parallel
Strand 12	A	502	515	anti-parallel
Strand 13	A	518	530	anti-parallel
Strand 14	A	539	550	anti-parallel
Strand 15	A	553	562	anti-parallel
Strand 16	A	569	575	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	115	first strand
Strand 2	B	177	185	parallel
Strand 3	B	163	172	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	199	first strand
Strand 2	B	258	267	parallel
Strand 3	B	238	244	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	272	first strand
Strand 2	B	284	293	anti-parallel
Strand 3	B	275	280	anti-parallel

Back to list of sheets
Back to top of page

There are 16 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	272	first strand
Strand 2	B	284	293	anti-parallel
Strand 3	B	302	310	anti-parallel
Strand 4	B	313	323	anti-parallel
Strand 5	B	330	343	anti-parallel
Strand 6	B	346	360	anti-parallel
Strand 7	B	366	380	anti-parallel
Strand 8	B	383	401	anti-parallel
Strand 9	B	410	420	anti-parallel
Strand 10	B	430	443	anti-parallel
Strand 11	B	447	460	anti-parallel
Strand 12	B	502	515	anti-parallel
Strand 13	B	518	530	anti-parallel
Strand 14	B	539	550	anti-parallel
Strand 15	B	553	562	anti-parallel
Strand 16	B	569	575	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8US2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8US2