Analysis of interatomic Contacts of Structural Units in PDB entry:
8UT2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UT2 entry

There are 12 chains in PDB entry 8UT2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 24	VAL 104
B	GLY 115	SER 486
C	GLN 24	VAL 104
D	GLY 115	SER 486
E	GLN 24	VAL 104
F	GLY 115	SER 486
G	ASP 1	LYS 107
H	ASP 1	VAL 119
I	ASP 1	LYS 107
J	ASP 1	VAL 119
K	ASP 1	LYS 107
L	ASP 1	VAL 119

There are 55 helices in PDB entry 8UT2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	32	Right-handed alpha
Helix 2	AA2	A	62	66	Right-handed 310
Helix 3	AA3	A	69	96	Right-handed alpha
Helix 4	AA4	B	128	141	Right-handed alpha
Helix 5	AA5	B	143	157	Right-handed alpha
Helix 6	AA6	B	178	185	Right-handed alpha
Helix 7	AA7	B	186	190	Right-handed 310
Helix 8	AA8	B	194	217	Right-handed alpha
Helix 9	AA9	B	235	239	Right-handed 310
Helix 10	AB1	B	242	249	Right-handed alpha
Helix 11	AB2	B	255	262	Right-handed alpha
Helix 12	AB3	B	352	360	Right-handed alpha
Helix 13	AB4	B	444	446	Right-handed 310
Helix 14	AB5	B	455	473	Right-handed alpha
Helix 15	AB6	B	473	478	Right-handed alpha
Helix 16	AB7	B	480	486	Right-handed alpha
Helix 17	AB8	C	26	33	Right-handed alpha
Helix 18	AB9	C	62	66	Right-handed 310
Helix 19	AC1	C	69	97	Right-handed alpha
Helix 20	AC2	D	128	141	Right-handed alpha
Helix 21	AC3	D	143	157	Right-handed alpha
Helix 22	AC4	D	178	185	Right-handed alpha
Helix 23	AC5	D	194	218	Right-handed alpha
Helix 24	AC6	D	242	249	Right-handed alpha
Helix 25	AC7	D	255	262	Right-handed alpha
Helix 26	AC8	D	352	360	Right-handed alpha
Helix 27	AC9	D	362	366	Right-handed 310
Helix 28	AD1	D	444	446	Right-handed 310
Helix 29	AD2	D	455	473	Right-handed alpha
Helix 30	AD3	D	473	478	Right-handed alpha
Helix 31	AD4	E	26	32	Right-handed alpha
Helix 32	AD5	E	62	66	Right-handed 310
Helix 33	AD6	E	69	96	Right-handed alpha
Helix 34	AD7	F	127	141	Right-handed alpha
Helix 35	AD8	F	143	157	Right-handed alpha
Helix 36	AD9	F	178	185	Right-handed alpha
Helix 37	AE1	F	186	190	Right-handed 310
Helix 38	AE2	F	194	218	Right-handed alpha
Helix 39	AE3	F	235	239	Right-handed 310
Helix 40	AE4	F	242	249	Right-handed alpha
Helix 41	AE5	F	255	262	Right-handed alpha
Helix 42	AE6	F	352	360	Right-handed alpha
Helix 43	AE7	F	362	366	Right-handed 310
Helix 44	AE8	F	444	446	Right-handed 310
Helix 45	AE9	F	455	473	Right-handed alpha
Helix 46	AF1	F	473	479	Right-handed alpha
Helix 47	AF2	F	481	486	Right-handed alpha
Helix 48	AF3	G	79	83	Right-handed 310
Helix 49	AF4	H	64	66	Right-handed 310
Helix 50	AF5	H	87	91	Right-handed 310
Helix 51	AF6	I	79	83	Right-handed 310
Helix 52	AF7	J	62	65	Right-handed 310
Helix 53	AF8	J	87	91	Right-handed 310
Helix 54	AF9	K	79	83	Right-handed 310
Helix 55	AG1	L	62	66	Right-handed 310

There are 33 sheets in PDB entry 8UT2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	336	first strand
Strand 2	B	341	343	anti-parallel
Strand 3	A	35	47	parallel
Strand 4	B	287	301	anti-parallel
Strand 5	B	318	322	anti-parallel
Strand 6	B	325	329	anti-parallel
Strand 7	B	348	350	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	164	first strand
Strand 2	B	172	175	anti-parallel
Strand 3	A	52	57	parallel
Strand 4	B	278	284	anti-parallel
Strand 5	B	266	273	anti-parallel
Strand 6	B	229	230	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	B	116	118	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	127	first strand
Strand 2	F	379	382	anti-parallel
Strand 3	F	385	388	anti-parallel
Strand 4	F	410	415	anti-parallel
Strand 5	F	440	442	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	306	first strand
Strand 2	B	309	314	anti-parallel
Strand 3	B	367	370	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	442	first strand
Strand 2	B	410	415	anti-parallel
Strand 3	B	385	388	anti-parallel
Strand 4	B	379	382	anti-parallel
Strand 5	D	126	127	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	404	first strand
Strand 2	B	395	397	anti-parallel
Strand 3	B	422	425	anti-parallel
Strand 4	B	428	431	anti-parallel
Strand 5	D	116	119	parallel
Strand 6	C	98	100	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	334	336	first strand
Strand 2	D	341	343	anti-parallel
Strand 3	C	36	47	parallel
Strand 4	D	287	300	anti-parallel
Strand 5	D	318	322	anti-parallel
Strand 6	D	325	329	anti-parallel
Strand 7	D	348	350	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	164	first strand
Strand 2	D	172	175	anti-parallel
Strand 3	C	51	57	parallel
Strand 4	D	278	284	anti-parallel
Strand 5	D	266	273	anti-parallel
Strand 6	D	228	230	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	306	first strand
Strand 2	D	309	313	anti-parallel
Strand 3	D	368	370	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	379	382	first strand
Strand 2	D	385	388	anti-parallel
Strand 3	D	410	415	anti-parallel
Strand 4	D	440	442	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	403	404	first strand
Strand 2	D	395	397	anti-parallel
Strand 3	D	422	424	anti-parallel
Strand 4	D	429	431	anti-parallel
Strand 5	F	116	119	parallel
Strand 6	E	98	100	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	161	164	first strand
Strand 2	F	172	175	anti-parallel
Strand 3	E	35	57	parallel
Strand 4	F	278	301	anti-parallel
Strand 5	F	341	343	first strand
Strand 6	F	334	336	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	229	230	first strand
Strand 2	F	266	273	anti-parallel
Strand 3	F	278	301	anti-parallel
Strand 4	E	35	57	anti-parallel
Strand 5	F	318	322	first strand
Strand 6	F	325	329	anti-parallel
Strand 7	F	348	350	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	304	306	first strand
Strand 2	F	309	313	anti-parallel
Strand 3	F	368	370	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	403	404	first strand
Strand 2	F	395	397	anti-parallel
Strand 3	F	422	425	anti-parallel
Strand 4	F	428	431	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	62	67	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	102	106	parallel
Strand 3	G	85	89	anti-parallel
Strand 4	G	34	38	anti-parallel
Strand 5	G	45	49	anti-parallel
Strand 6	G	53	54	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	45	53	anti-parallel
Strand 3	H	34	41	anti-parallel
Strand 4	H	92	99	anti-parallel
Strand 5	H	110	111	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	45	53	anti-parallel
Strand 3	H	34	41	anti-parallel
Strand 4	H	92	99	anti-parallel
Strand 5	H	115	117	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	70	75	anti-parallel
Strand 4	I	62	67	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	103	106	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	53	54	first strand
Strand 2	I	45	49	anti-parallel
Strand 3	I	34	38	anti-parallel
Strand 4	I	85	89	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	73	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	58	60	first strand
Strand 2	J	45	53	anti-parallel
Strand 3	J	34	41	anti-parallel
Strand 4	J	97	99	anti-parallel
Strand 5	J	110	111	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	58	60	first strand
Strand 2	J	45	53	anti-parallel
Strand 3	J	34	41	anti-parallel
Strand 4	J	92	95	anti-parallel
Strand 5	J	115	117	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	7	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	70	76	anti-parallel
Strand 4	K	62	67	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	103	105	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	53	54	first strand
Strand 2	K	45	49	anti-parallel
Strand 3	K	33	38	anti-parallel
Strand 4	K	85	90	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	7	first strand
Strand 2	L	18	25	anti-parallel
Strand 3	L	78	83	anti-parallel
Strand 4	L	68	73	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	58	60	first strand
Strand 2	L	45	52	anti-parallel
Strand 3	L	34	41	anti-parallel
Strand 4	L	97	99	anti-parallel
Strand 5	L	108	111	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	58	60	first strand
Strand 2	L	45	52	anti-parallel
Strand 3	L	34	41	anti-parallel
Strand 4	L	92	95	anti-parallel
Strand 5	L	115	117	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UT2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UT2