Analysis of interatomic Contacts of Structural Units in PDB entry:
8UT4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UT4 entry

There are 8 chains in PDB entry 8UT4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 11	SER 333
B	ILE 10	ILE 173
C	ASP 11	SER 333
D	ILE 10	ILE 173
E	ASP 11	SER 333
F	ILE 10	ILE 173
I	VAL 2	SER 127
H	ILE 22	ILE 128

There are 29 helices in PDB entry 8UT4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	66	73	Right-handed alpha
Helix 2	AA2	A	74	78	Right-handed 310
Helix 3	AA3	A	107	115	Right-handed alpha
Helix 4	AA4	A	194	202	Right-handed alpha
Helix 5	AA5	B	37	58	Right-handed alpha
Helix 6	AA6	B	74	126	Right-handed alpha
Helix 7	AA7	B	147	155	Right-handed alpha
Helix 8	AA8	B	163	171	Right-handed alpha
Helix 9	AA9	C	66	73	Right-handed alpha
Helix 10	AB1	C	74	78	Right-handed 310
Helix 11	AB2	C	107	115	Right-handed alpha
Helix 12	AB3	C	194	202	Right-handed alpha
Helix 13	AB4	D	37	58	Right-handed alpha
Helix 14	AB5	D	74	127	Right-handed alpha
Helix 15	AB6	D	145	155	Right-handed alpha
Helix 16	AB7	D	158	161	Right-handed 310
Helix 17	AB8	D	162	172	Right-handed alpha
Helix 18	AB9	E	66	73	Right-handed alpha
Helix 19	AC1	E	74	78	Right-handed 310
Helix 20	AC2	E	107	115	Right-handed alpha
Helix 21	AC3	E	194	202	Right-handed alpha
Helix 22	AC4	F	37	58	Right-handed alpha
Helix 23	AC5	F	74	127	Right-handed alpha
Helix 24	AC6	F	145	155	Right-handed alpha
Helix 25	AC7	F	158	173	Right-handed alpha
Helix 26	AC8	I	61	65	Right-handed 310
Helix 27	AC9	I	108	112	Right-handed 310
Helix 28	AD1	H	50	52	Right-handed 310
Helix 29	AD2	H	100	104	Right-handed 310

There are 38 sheets in PDB entry 8UT4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	36	first strand
Strand 2	B	22	27	anti-parallel
Strand 3	A	12	17	anti-parallel
Strand 4	B	137	140	anti-parallel
Strand 5	B	130	132	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	A	34	35	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	323	324	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	302	303	parallel
Strand 3	A	315	316	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	54	first strand
Strand 2	A	282	287	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	89	91	parallel
Strand 3	A	275	277	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	125	first strand
Strand 2	A	263	269	anti-parallel
Strand 3	A	182	191	anti-parallel
Strand 4	A	258	261	anti-parallel
Strand 5	A	158	160	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	125	first strand
Strand 2	A	263	269	anti-parallel
Strand 3	A	182	191	anti-parallel
Strand 4	A	236	244	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	148	first strand
Strand 2	A	151	153	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	176	first strand
Strand 2	A	249	254	anti-parallel
Strand 3	A	209	212	anti-parallel
Strand 4	A	217	220	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	296	first strand
Strand 2	A	289	291	anti-parallel
Strand 3	A	310	311	anti-parallel
Strand 4	B	64	65	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	32	first strand
Strand 2	D	22	28	anti-parallel
Strand 3	D	35	36	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	32	first strand
Strand 2	D	22	28	anti-parallel
Strand 3	C	12	17	anti-parallel
Strand 4	D	137	140	anti-parallel
Strand 5	D	130	132	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	26	first strand
Strand 2	C	34	35	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	41	first strand
Strand 2	C	323	325	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	C	302	303	parallel
Strand 3	C	315	316	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	54	first strand
Strand 2	C	282	287	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	89	91	parallel
Strand 3	C	275	277	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	125	first strand
Strand 2	C	263	267	anti-parallel
Strand 3	C	182	191	anti-parallel
Strand 4	C	258	261	anti-parallel
Strand 5	C	158	160	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	125	first strand
Strand 2	C	263	267	anti-parallel
Strand 3	C	182	191	anti-parallel
Strand 4	C	236	244	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	176	first strand
Strand 2	C	249	254	anti-parallel
Strand 3	C	209	212	anti-parallel
Strand 4	C	217	220	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	295	first strand
Strand 2	C	289	291	anti-parallel
Strand 3	C	310	311	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	33	first strand
Strand 2	F	22	28	anti-parallel
Strand 3	E	12	17	anti-parallel
Strand 4	F	137	140	anti-parallel
Strand 5	F	130	132	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	26	first strand
Strand 2	E	34	35	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	41	first strand
Strand 2	E	323	325	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	44	first strand
Strand 2	E	302	303	parallel
Strand 3	E	315	316	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	54	first strand
Strand 2	E	282	287	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	61	first strand
Strand 2	E	89	91	parallel
Strand 3	E	275	277	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	125	first strand
Strand 2	E	263	269	anti-parallel
Strand 3	E	182	191	anti-parallel
Strand 4	E	258	261	anti-parallel
Strand 5	E	158	160	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	125	first strand
Strand 2	E	263	269	anti-parallel
Strand 3	E	182	191	anti-parallel
Strand 4	E	236	244	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	175	first strand
Strand 2	E	250	254	anti-parallel
Strand 3	E	209	212	anti-parallel
Strand 4	E	217	220	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	294	295	first strand
Strand 2	E	289	291	anti-parallel
Strand 3	E	310	311	anti-parallel
Strand 4	F	64	65	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	11	first strand
Strand 2	I	123	124	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	18	20	first strand
Strand 2	I	81	83	anti-parallel
Strand 3	I	68	69	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	46	48	first strand
Strand 2	I	34	38	anti-parallel
Strand 3	I	95	98	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	24	26	first strand
Strand 2	H	37	45	anti-parallel
Strand 3	H	91	98	anti-parallel
Strand 4	H	83	88	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	32	first strand
Strand 2	H	125	127	parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	74	75	first strand
Strand 2	H	66	70	anti-parallel
Strand 3	H	54	59	anti-parallel
Strand 4	H	106	112	anti-parallel
Strand 5	H	118	120	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UT4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UT4