Analysis of interatomic Contacts of Structural Units in PDB entry:
8UTP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UTP entry

There are 7 chains in PDB entry 8UTP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	ALA 4	GLY 389
N	MET 1	GLY 389
A	MET 1	VAL 440
B	MET 1	GLU 432
E	MET 1	TYR 451
I	MET 1	GLN 433
S	MET 1	TYR 451

There are127 helices in PDB entry 8UTP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	16	22	Right-handed alpha
Helix 2	AA2	K	69	77	Right-handed alpha
Helix 3	AA3	K	77	88	Right-handed alpha
Helix 4	AA4	K	102	108	Right-handed alpha
Helix 5	AA5	K	117	134	Right-handed alpha
Helix 6	AA6	K	188	203	Right-handed alpha
Helix 7	AA7	K	254	259	Right-handed alpha
Helix 8	AA8	K	262	295	Right-handed alpha
Helix 9	AA9	K	305	308	Right-handed 310
Helix 10	AB1	K	309	315	Right-handed alpha
Helix 11	AB2	K	315	320	Right-handed alpha
Helix 12	AB3	K	337	353	Right-handed alpha
Helix 13	AB4	K	363	386	Right-handed alpha
Helix 14	AB5	N	16	22	Right-handed alpha
Helix 15	AB6	N	69	77	Right-handed alpha
Helix 16	AB7	N	77	87	Right-handed alpha
Helix 17	AB8	N	102	108	Right-handed alpha
Helix 18	AB9	N	117	133	Right-handed alpha
Helix 19	AC1	N	188	202	Right-handed alpha
Helix 20	AC2	N	262	296	Right-handed alpha
Helix 21	AC3	N	305	308	Right-handed 310
Helix 22	AC4	N	309	315	Right-handed alpha
Helix 23	AC5	N	315	320	Right-handed alpha
Helix 24	AC6	N	337	350	Right-handed alpha
Helix 25	AC7	N	363	386	Right-handed alpha
Helix 26	AC8	A	10	29	Right-handed alpha
Helix 27	AC9	A	36	43	Right-handed alpha
Helix 28	AD1	A	72	80	Right-handed alpha
Helix 29	AD2	A	102	108	Right-handed alpha
Helix 30	AD3	A	113	128	Right-handed alpha
Helix 31	AD4	A	143	161	Right-handed alpha
Helix 32	AD5	A	182	190	Right-handed alpha
Helix 33	AD6	A	190	197	Right-handed alpha
Helix 34	AD7	A	205	216	Right-handed alpha
Helix 35	AD8	A	223	240	Right-handed alpha
Helix 36	AD9	A	241	243	Right-handed 310
Helix 37	AE1	A	251	258	Right-handed alpha
Helix 38	AE2	A	277	282	Right-handed alpha
Helix 39	AE3	A	287	296	Right-handed alpha
Helix 40	AE4	A	297	301	Right-handed 310
Helix 41	AE5	A	306	310	Right-handed 310
Helix 42	AE6	A	324	338	Right-handed alpha
Helix 43	AE7	A	383	400	Right-handed alpha
Helix 44	AE8	A	404	410	Right-handed alpha
Helix 45	AE9	A	415	436	Right-handed alpha
Helix 46	AF1	B	10	29	Right-handed alpha
Helix 47	AF2	B	41	46	Right-handed alpha
Helix 48	AF3	B	47	49	Right-handed 310
Helix 49	AF4	B	69	78	Right-handed alpha
Helix 50	AF5	B	86	88	Right-handed 310
Helix 51	AF6	B	100	106	Right-handed alpha
Helix 52	AF7	B	108	126	Right-handed alpha
Helix 53	AF8	B	142	159	Right-handed alpha
Helix 54	AF9	B	180	193	Right-handed alpha
Helix 55	AG1	B	204	214	Right-handed alpha
Helix 56	AG2	B	221	237	Right-handed alpha
Helix 57	AG3	B	238	241	Right-handed 310
Helix 58	AG4	B	249	258	Right-handed alpha
Helix 59	AG5	B	285	294	Right-handed alpha
Helix 60	AG6	B	295	299	Right-handed 310
Helix 61	AG7	B	304	308	Right-handed 310
Helix 62	AG8	B	322	337	Right-handed alpha
Helix 63	AG9	B	338	341	Right-handed 310
Helix 64	AH1	B	373	390	Right-handed alpha
Helix 65	AH2	B	394	400	Right-handed alpha
Helix 66	AH3	B	404	427	Right-handed alpha
Helix 67	AH4	E	10	28	Right-handed alpha
Helix 68	AH5	E	36	43	Right-handed alpha
Helix 69	AH6	E	72	80	Right-handed alpha
Helix 70	AH7	E	102	108	Right-handed alpha
Helix 71	AH8	E	114	129	Right-handed alpha
Helix 72	AH9	E	143	161	Right-handed alpha
Helix 73	AI1	E	182	190	Right-handed alpha
Helix 74	AI2	E	190	197	Right-handed alpha
Helix 75	AI3	E	205	216	Right-handed alpha
Helix 76	AI4	E	223	240	Right-handed alpha
Helix 77	AI5	E	241	243	Right-handed 310
Helix 78	AI6	E	251	260	Right-handed alpha
Helix 79	AI7	E	277	282	Right-handed alpha
Helix 80	AI8	E	287	296	Right-handed alpha
Helix 81	AI9	E	297	301	Right-handed 310
Helix 82	AJ1	E	306	310	Right-handed 310
Helix 83	AJ2	E	324	338	Right-handed alpha
Helix 84	AJ3	E	383	400	Right-handed alpha
Helix 85	AJ4	E	404	410	Right-handed alpha
Helix 86	AJ5	E	415	436	Right-handed alpha
Helix 87	AJ6	I	10	28	Right-handed alpha
Helix 88	AJ7	I	46	49	Right-handed 310
Helix 89	AJ8	I	70	78	Right-handed alpha
Helix 90	AJ9	I	81	85	Right-handed 310
Helix 91	AK1	I	86	88	Right-handed 310
Helix 92	AK2	I	100	106	Right-handed alpha
Helix 93	AK3	I	108	126	Right-handed alpha
Helix 94	AK4	I	142	159	Right-handed alpha
Helix 95	AK5	I	180	193	Right-handed alpha
Helix 96	AK6	I	203	214	Right-handed alpha
Helix 97	AK7	I	221	242	Right-handed alpha
Helix 98	AK8	I	249	258	Right-handed alpha
Helix 99	AK9	I	275	282	Right-handed 310
Helix 100	AL1	I	285	294	Right-handed alpha
Helix 101	AL2	I	295	299	Right-handed 310
Helix 102	AL3	I	304	308	Right-handed 310
Helix 103	AL4	I	322	337	Right-handed alpha
Helix 104	AL5	I	338	341	Right-handed 310
Helix 105	AL6	I	373	390	Right-handed alpha
Helix 106	AL7	I	395	400	Right-handed alpha
Helix 107	AL8	I	404	424	Right-handed alpha
Helix 108	AL9	S	10	29	Right-handed alpha
Helix 109	AM1	S	36	43	Right-handed alpha
Helix 110	AM2	S	71	80	Right-handed alpha
Helix 111	AM3	S	102	108	Right-handed alpha
Helix 112	AM4	S	114	129	Right-handed alpha
Helix 113	AM5	S	143	161	Right-handed alpha
Helix 114	AM6	S	182	198	Right-handed alpha
Helix 115	AM7	S	206	216	Right-handed alpha
Helix 116	AM8	S	223	240	Right-handed alpha
Helix 117	AM9	S	241	243	Right-handed 310
Helix 118	AN1	S	251	260	Right-handed alpha
Helix 119	AN2	S	262	266	Right-handed 310
Helix 120	AN3	S	277	282	Right-handed alpha
Helix 121	AN4	S	287	297	Right-handed alpha
Helix 122	AN5	S	298	301	Right-handed 310
Helix 123	AN6	S	306	310	Right-handed 310
Helix 124	AN7	S	324	337	Right-handed alpha
Helix 125	AN8	S	383	400	Right-handed alpha
Helix 126	AN9	S	404	411	Right-handed alpha
Helix 127	AO1	S	414	436	Right-handed alpha

There are 24 sheets in PDB entry 8UTP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	54	57	first strand
Strand 2	K	7	12	parallel
Strand 3	K	324	331	parallel
Strand 4	K	91	96	parallel
Strand 5	K	240	248	parallel
Strand 6	K	218	229	anti-parallel
Strand 7	K	138	149	anti-parallel
Strand 8	K	154	156	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	54	57	first strand
Strand 2	K	7	12	parallel
Strand 3	K	324	331	parallel
Strand 4	K	91	96	parallel
Strand 5	K	240	248	parallel
Strand 6	K	218	229	anti-parallel
Strand 7	K	138	149	anti-parallel
Strand 8	K	184	185	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	28	31	first strand
Strand 2	K	34	37	anti-parallel
Strand 3	K	49	51	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	168	171	first strand
Strand 2	K	175	178	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	205	208	first strand
Strand 2	K	211	215	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	54	56	first strand
Strand 2	N	6	11	parallel
Strand 3	N	323	330	parallel
Strand 4	N	90	96	parallel
Strand 5	N	236	248	parallel
Strand 6	N	218	230	anti-parallel
Strand 7	N	139	150	anti-parallel
Strand 8	N	153	156	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	54	56	first strand
Strand 2	N	6	11	parallel
Strand 3	N	323	330	parallel
Strand 4	N	90	96	parallel
Strand 5	N	236	248	parallel
Strand 6	N	218	230	anti-parallel
Strand 7	N	139	150	anti-parallel
Strand 8	N	184	185	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	28	31	first strand
Strand 2	N	34	38	anti-parallel
Strand 3	N	47	51	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	168	171	first strand
Strand 2	N	175	178	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	205	206	first strand
Strand 2	N	214	215	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	68	first strand
Strand 2	A	3	9	parallel
Strand 3	A	132	140	parallel
Strand 4	A	165	171	parallel
Strand 5	A	200	204	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	272	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	321	anti-parallel
Strand 4	A	351	356	parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	63	67	parallel
Strand 3	B	2	9	parallel
Strand 4	B	129	138	parallel
Strand 5	B	163	170	parallel
Strand 6	B	199	203	parallel
Strand 7	B	265	271	parallel
Strand 8	B	364	371	anti-parallel
Strand 9	B	310	318	anti-parallel
Strand 10	B	349	354	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	53	first strand
Strand 2	B	59	61	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	68	first strand
Strand 2	E	3	9	parallel
Strand 3	E	132	140	parallel
Strand 4	E	165	171	parallel
Strand 5	E	200	204	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	55	first strand
Strand 2	E	61	63	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	269	272	first strand
Strand 2	E	373	381	anti-parallel
Strand 3	E	312	321	anti-parallel
Strand 4	E	352	356	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	90	92	first strand
Strand 2	I	64	67	parallel
Strand 3	I	2	9	parallel
Strand 4	I	129	138	parallel
Strand 5	I	163	164	parallel

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There are 10 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	90	92	first strand
Strand 2	I	64	67	parallel
Strand 3	I	2	9	parallel
Strand 4	I	129	138	parallel
Strand 5	I	167	169	parallel
Strand 6	I	199	202	parallel
Strand 7	I	265	271	parallel
Strand 8	I	364	371	anti-parallel
Strand 9	I	310	318	anti-parallel
Strand 10	I	349	354	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	51	53	first strand
Strand 2	I	59	61	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	65	68	first strand
Strand 2	S	3	9	parallel
Strand 3	S	132	140	parallel
Strand 4	S	165	172	parallel
Strand 5	S	200	205	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	53	55	first strand
Strand 2	S	61	63	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	269	272	first strand
Strand 2	S	373	381	anti-parallel
Strand 3	S	312	321	anti-parallel
Strand 4	S	351	356	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UTP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UTP