Analysis of interatomic Contacts of Structural Units in PDB entry:
8UTR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UTR entry

There are 3 chains in PDB entry 8UTR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	MET 1	ASN 357
A	MET 1	VAL 440
B	MET 1	GLN 433

There are 53 helices in PDB entry 8UTR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	16	22	Right-handed alpha
Helix 2	AA2	K	69	77	Right-handed alpha
Helix 3	AA3	K	77	87	Right-handed alpha
Helix 4	AA4	K	103	108	Right-handed alpha
Helix 5	AA5	K	117	134	Right-handed alpha
Helix 6	AA6	K	188	202	Right-handed alpha
Helix 7	AA7	K	262	296	Right-handed alpha
Helix 8	AA8	K	305	308	Right-handed 310
Helix 9	AA9	K	309	315	Right-handed alpha
Helix 10	AB1	K	334	336	Right-handed 310
Helix 11	AB2	K	337	349	Right-handed alpha
Helix 12	AB3	A	10	29	Right-handed alpha
Helix 13	AB4	A	36	43	Right-handed alpha
Helix 14	AB5	A	71	80	Right-handed alpha
Helix 15	AB6	A	102	108	Right-handed alpha
Helix 16	AB7	A	114	128	Right-handed alpha
Helix 17	AB8	A	143	161	Right-handed alpha
Helix 18	AB9	A	182	190	Right-handed alpha
Helix 19	AC1	A	190	197	Right-handed alpha
Helix 20	AC2	A	206	216	Right-handed alpha
Helix 21	AC3	A	223	240	Right-handed alpha
Helix 22	AC4	A	241	243	Right-handed 310
Helix 23	AC5	A	251	260	Right-handed alpha
Helix 24	AC6	A	262	266	Right-handed 310
Helix 25	AC7	A	277	282	Right-handed alpha
Helix 26	AC8	A	287	297	Right-handed alpha
Helix 27	AC9	A	298	301	Right-handed 310
Helix 28	AD1	A	306	310	Right-handed 310
Helix 29	AD2	A	324	338	Right-handed alpha
Helix 30	AD3	A	383	400	Right-handed alpha
Helix 31	AD4	A	404	410	Right-handed alpha
Helix 32	AD5	A	414	436	Right-handed alpha
Helix 33	AD6	B	10	29	Right-handed alpha
Helix 34	AD7	B	40	45	Right-handed 310
Helix 35	AD8	B	46	49	Right-handed 310
Helix 36	AD9	B	70	78	Right-handed alpha
Helix 37	AE1	B	86	88	Right-handed 310
Helix 38	AE2	B	100	106	Right-handed alpha
Helix 39	AE3	B	108	126	Right-handed alpha
Helix 40	AE4	B	142	159	Right-handed alpha
Helix 41	AE5	B	180	195	Right-handed alpha
Helix 42	AE6	B	204	214	Right-handed alpha
Helix 43	AE7	B	221	237	Right-handed alpha
Helix 44	AE8	B	238	241	Right-handed 310
Helix 45	AE9	B	249	258	Right-handed alpha
Helix 46	AF1	B	285	294	Right-handed alpha
Helix 47	AF2	B	295	299	Right-handed 310
Helix 48	AF3	B	304	308	Right-handed 310
Helix 49	AF4	B	322	337	Right-handed alpha
Helix 50	AF5	B	338	341	Right-handed 310
Helix 51	AF6	B	373	390	Right-handed alpha
Helix 52	AF7	B	394	400	Right-handed alpha
Helix 53	AF8	B	404	425	Right-handed alpha

There are 10 sheets in PDB entry 8UTR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	54	57	first strand
Strand 2	K	6	12	parallel
Strand 3	K	323	331	parallel
Strand 4	K	90	96	parallel
Strand 5	K	237	248	parallel
Strand 6	K	218	229	anti-parallel
Strand 7	K	138	150	anti-parallel
Strand 8	K	153	156	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	54	57	first strand
Strand 2	K	6	12	parallel
Strand 3	K	323	331	parallel
Strand 4	K	90	96	parallel
Strand 5	K	237	248	parallel
Strand 6	K	218	229	anti-parallel
Strand 7	K	138	150	anti-parallel
Strand 8	K	184	185	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	28	31	first strand
Strand 2	K	34	38	anti-parallel
Strand 3	K	47	51	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	168	171	first strand
Strand 2	K	175	178	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	205	206	first strand
Strand 2	K	214	215	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	68	first strand
Strand 2	A	3	9	parallel
Strand 3	A	132	138	parallel
Strand 4	A	165	172	parallel
Strand 5	A	200	205	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	272	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	321	anti-parallel
Strand 4	A	351	356	parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	63	67	parallel
Strand 3	B	3	9	parallel
Strand 4	B	130	138	parallel
Strand 5	B	163	170	parallel
Strand 6	B	198	203	parallel
Strand 7	B	265	271	parallel
Strand 8	B	363	371	anti-parallel
Strand 9	B	310	319	anti-parallel
Strand 10	B	349	354	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	53	first strand
Strand 2	B	59	61	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UTR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UTR