Analysis of interatomic Contacts of Structural Units in PDB entry:
8UTU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UTU entry

There are 4 chains in PDB entry 8UTU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	ALA 4	GLY 389
A	MET 1	VAL 440
B	MET 1	GLU 432
E	MET 1	TYR 451

There are 70 helices in PDB entry 8UTU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	16	22	Right-handed alpha
Helix 2	AA2	K	69	77	Right-handed alpha
Helix 3	AA3	K	77	88	Right-handed alpha
Helix 4	AA4	K	102	108	Right-handed alpha
Helix 5	AA5	K	119	134	Right-handed alpha
Helix 6	AA6	K	188	203	Right-handed alpha
Helix 7	AA7	K	262	295	Right-handed alpha
Helix 8	AA8	K	309	315	Right-handed alpha
Helix 9	AA9	K	315	320	Right-handed alpha
Helix 10	AB1	K	334	336	Right-handed 310
Helix 11	AB2	K	337	353	Right-handed alpha
Helix 12	AB3	K	363	386	Right-handed alpha
Helix 13	AB4	A	10	29	Right-handed alpha
Helix 14	AB5	A	36	43	Right-handed alpha
Helix 15	AB6	A	71	80	Right-handed alpha
Helix 16	AB7	A	102	108	Right-handed alpha
Helix 17	AB8	A	114	129	Right-handed alpha
Helix 18	AB9	A	143	161	Right-handed alpha
Helix 19	AC1	A	182	190	Right-handed alpha
Helix 20	AC2	A	190	197	Right-handed alpha
Helix 21	AC3	A	205	216	Right-handed alpha
Helix 22	AC4	A	223	244	Right-handed alpha
Helix 23	AC5	A	251	260	Right-handed alpha
Helix 24	AC6	A	262	266	Right-handed 310
Helix 25	AC7	A	277	282	Right-handed alpha
Helix 26	AC8	A	287	296	Right-handed alpha
Helix 27	AC9	A	297	301	Right-handed 310
Helix 28	AD1	A	306	310	Right-handed 310
Helix 29	AD2	A	324	338	Right-handed alpha
Helix 30	AD3	A	383	400	Right-handed alpha
Helix 31	AD4	A	405	410	Right-handed alpha
Helix 32	AD5	A	415	432	Right-handed alpha
Helix 33	AD6	B	10	29	Right-handed alpha
Helix 34	AD7	B	46	49	Right-handed 310
Helix 35	AD8	B	69	78	Right-handed alpha
Helix 36	AD9	B	86	88	Right-handed 310
Helix 37	AE1	B	100	106	Right-handed alpha
Helix 38	AE2	B	108	126	Right-handed alpha
Helix 39	AE3	B	141	159	Right-handed alpha
Helix 40	AE4	B	180	193	Right-handed alpha
Helix 41	AE5	B	204	214	Right-handed alpha
Helix 42	AE6	B	221	242	Right-handed alpha
Helix 43	AE7	B	249	258	Right-handed alpha
Helix 44	AE8	B	285	294	Right-handed alpha
Helix 45	AE9	B	295	299	Right-handed 310
Helix 46	AF1	B	304	308	Right-handed 310
Helix 47	AF2	B	322	337	Right-handed alpha
Helix 48	AF3	B	338	341	Right-handed 310
Helix 49	AF4	B	373	390	Right-handed alpha
Helix 50	AF5	B	395	400	Right-handed alpha
Helix 51	AF6	B	404	425	Right-handed alpha
Helix 52	AF7	E	10	29	Right-handed alpha
Helix 53	AF8	E	36	43	Right-handed alpha
Helix 54	AF9	E	71	80	Right-handed alpha
Helix 55	AG1	E	102	108	Right-handed alpha
Helix 56	AG2	E	114	129	Right-handed alpha
Helix 57	AG3	E	143	161	Right-handed alpha
Helix 58	AG4	E	182	197	Right-handed alpha
Helix 59	AG5	E	205	216	Right-handed alpha
Helix 60	AG6	E	223	244	Right-handed alpha
Helix 61	AG7	E	251	260	Right-handed alpha
Helix 62	AG8	E	277	282	Right-handed alpha
Helix 63	AG9	E	287	296	Right-handed alpha
Helix 64	AH1	E	297	301	Right-handed 310
Helix 65	AH2	E	306	310	Right-handed 310
Helix 66	AH3	E	324	338	Right-handed alpha
Helix 67	AH4	E	383	400	Right-handed alpha
Helix 68	AH5	E	405	410	Right-handed alpha
Helix 69	AH6	E	414	417	Right-handed 310
Helix 70	AH7	E	418	437	Right-handed alpha

There are 13 sheets in PDB entry 8UTU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	54	57	first strand
Strand 2	K	7	12	parallel
Strand 3	K	324	331	parallel
Strand 4	K	91	96	parallel
Strand 5	K	240	248	parallel
Strand 6	K	218	228	anti-parallel
Strand 7	K	139	149	anti-parallel
Strand 8	K	154	156	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	54	57	first strand
Strand 2	K	7	12	parallel
Strand 3	K	324	331	parallel
Strand 4	K	91	96	parallel
Strand 5	K	240	248	parallel
Strand 6	K	218	228	anti-parallel
Strand 7	K	139	149	anti-parallel
Strand 8	K	184	186	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	28	31	first strand
Strand 2	K	34	37	anti-parallel
Strand 3	K	48	51	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	168	171	first strand
Strand 2	K	175	178	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	205	206	first strand
Strand 2	K	214	215	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	68	first strand
Strand 2	A	3	9	parallel
Strand 3	A	132	138	parallel
Strand 4	A	165	171	parallel
Strand 5	A	200	204	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	272	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	321	anti-parallel
Strand 4	A	351	356	parallel

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There are 11 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	65	66	parallel
Strand 3	B	3	9	parallel
Strand 4	B	130	138	parallel
Strand 5	B	163	170	parallel
Strand 6	B	198	203	parallel
Strand 7	B	265	271	parallel
Strand 8	B	364	371	anti-parallel
Strand 9	B	310	318	anti-parallel
Strand 10	B	349	354	parallel
Strand 11	B	244	246	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	58	61	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	68	first strand
Strand 2	E	3	9	parallel
Strand 3	E	132	140	parallel
Strand 4	E	165	171	parallel
Strand 5	E	200	204	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	55	first strand
Strand 2	E	61	63	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	269	272	first strand
Strand 2	E	373	381	anti-parallel
Strand 3	E	312	321	anti-parallel
Strand 4	E	352	356	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UTU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UTU