Analysis of interatomic Contacts of Structural Units in PDB entry:
8UUA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UUA entry

There are 30 chains in PDB entry 8UUA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
v	MET 1	GLU 418
A	G 2	C 2930
B	C 2	G 115
C	ALA 2	ARG 274
D	THR 2	LYS 207
E	LEU 4	LEU 206
F	ASN 2	PRO 176
G	SER 2	LYS 178
L	ARG 2	LEU 143
M	MET 1	LEU 122
N	LEU 3	ILE 146
O	LEU 2	ARG 134
P	TYR 3	VAL 135
Q	ILE 2	PHE 119
R	MET 1	LEU 103
S	PRO 2	LEU 117
T	MET 1	ASN 101
U	THR 6	VAL 115
V	ASP 2	PHE 91
W	MET 1	ASP 102
Y	GLY 16	PRO 91
Z	ALA 2	GLU 60
1	ALA 3	GLU 61
2	LYS 3	GLU 58
3	MET 1	THR 59
4	ALA 2	VAL 54
5	ARG 2	THR 48
6	MET 1	SER 43
7	PRO 2	LYS 64
8	MET 1	GLN 36

There are 98 helices in PDB entry 8UUA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	v	17	30	Right-handed alpha
Helix 2	AA2	v	53	68	Right-handed alpha
Helix 3	AA3	v	79	91	Right-handed alpha
Helix 4	AA4	v	97	108	Right-handed alpha
Helix 5	AA5	v	111	127	Right-handed alpha
Helix 6	AA6	v	129	139	Right-handed alpha
Helix 7	AA7	v	154	182	Right-handed alpha
Helix 8	AA8	v	185	191	Right-handed alpha
Helix 9	AA9	v	205	217	Right-handed alpha
Helix 10	AB1	v	263	274	Right-handed alpha
Helix 11	AB2	v	274	279	Right-handed alpha
Helix 12	AB3	v	293	309	Right-handed alpha
Helix 13	AB4	v	344	360	Right-handed alpha
Helix 14	AB5	v	377	385	Right-handed alpha
Helix 15	AB6	v	404	411	Right-handed alpha
Helix 16	AB7	C	30	32	Right-handed 310
Helix 17	AB8	C	133	135	Right-handed 310
Helix 18	AB9	C	199	203	Right-handed 310
Helix 19	AC1	C	207	214	Right-handed alpha
Helix 20	AC2	C	221	225	Right-handed 310
Helix 21	AC3	D	40	45	Right-handed alpha
Helix 22	AC4	D	57	61	Right-handed 310
Helix 23	AC5	D	62	71	Right-handed alpha
Helix 24	AC6	D	98	102	Right-handed 310
Helix 25	AC7	D	121	126	Right-handed alpha
Helix 26	AC8	E	20	25	Right-handed alpha
Helix 27	AC9	E	29	43	Right-handed alpha
Helix 28	AD1	E	102	120	Right-handed alpha
Helix 29	AD2	E	135	146	Right-handed alpha
Helix 30	AD3	E	162	167	Right-handed alpha
Helix 31	AD4	E	182	188	Right-handed alpha
Helix 32	AD5	E	196	206	Right-handed alpha
Helix 33	AD6	F	3	20	Right-handed alpha
Helix 34	AD7	F	24	28	Right-handed 310
Helix 35	AD8	F	47	61	Right-handed alpha
Helix 36	AD9	F	92	107	Right-handed alpha
Helix 37	AE1	F	134	138	Right-handed 310
Helix 38	AE2	F	142	146	Right-handed 310
Helix 39	AE3	F	162	173	Right-handed alpha
Helix 40	AE4	G	3	7	Right-handed alpha
Helix 41	AE5	G	58	81	Right-handed alpha
Helix 42	AE6	G	137	150	Right-handed alpha
Helix 43	AE7	L	25	39	Right-handed alpha
Helix 44	AE8	L	59	63	Right-handed 310
Helix 45	AE9	L	68	73	Right-handed alpha
Helix 46	AF1	L	90	97	Right-handed alpha
Helix 47	AF2	L	97	108	Right-handed alpha
Helix 48	AF3	L	113	121	Right-handed alpha
Helix 49	AF4	L	133	137	Right-handed 310
Helix 50	AF5	M	104	109	Right-handed alpha
Helix 51	AF6	M	111	118	Right-handed alpha
Helix 52	AF7	N	56	61	Right-handed 310
Helix 53	AF8	N	80	85	Right-handed 310
Helix 54	AF9	N	92	100	Right-handed alpha
Helix 55	AG1	N	129	139	Right-handed alpha
Helix 56	AG2	O	44	58	Right-handed alpha
Helix 57	AG3	O	110	123	Right-handed alpha
Helix 58	AG4	P	9	28	Right-handed alpha
Helix 59	AG5	P	34	54	Right-handed alpha
Helix 60	AG6	P	55	63	Right-handed alpha
Helix 61	AG7	P	94	101	Right-handed alpha
Helix 62	AG8	P	101	106	Right-handed alpha
Helix 63	AG9	Q	6	20	Right-handed alpha
Helix 64	AH1	Q	69	88	Right-handed alpha
Helix 65	AH2	Q	103	115	Right-handed alpha
Helix 66	AH3	R	2	9	Right-handed alpha
Helix 67	AH4	R	53	56	Right-handed 310
Helix 68	AH5	R	97	101	Right-handed 310
Helix 69	AH6	S	8	20	Right-handed alpha
Helix 70	AH7	S	25	30	Right-handed 310
Helix 71	AH8	S	31	71	Right-handed alpha
Helix 72	AH9	S	75	86	Right-handed alpha
Helix 73	AI1	S	91	102	Right-handed alpha
Helix 74	AI2	S	102	117	Right-handed alpha
Helix 75	AI3	U	18	27	Right-handed alpha
Helix 76	AI4	U	33	43	Right-handed alpha
Helix 77	AI5	U	48	68	Right-handed alpha
Helix 78	AI6	U	94	96	Right-handed 310
Helix 79	AI7	V	3	6	Right-handed alpha
Helix 80	AI8	V	13	20	Right-handed alpha
Helix 81	AI9	V	34	47	Right-handed alpha
Helix 82	AJ1	1	5	9	Right-handed 310
Helix 83	AJ2	1	12	35	Right-handed alpha
Helix 84	AJ3	1	41	60	Right-handed alpha
Helix 85	AJ4	2	16	26	Right-handed alpha
Helix 86	AJ5	2	40	50	Right-handed alpha
Helix 87	AJ6	3	51	55	Right-handed 310
Helix 88	AJ7	4	9	17	Right-handed alpha
Helix 89	AJ8	4	18	20	Right-handed 310
Helix 90	AJ9	6	8	17	Right-handed alpha
Helix 91	AK1	6	17	22	Right-handed alpha
Helix 92	AK2	6	24	38	Right-handed alpha
Helix 93	AK3	7	7	12	Right-handed alpha
Helix 94	AK4	7	32	36	Right-handed 310
Helix 95	AK5	7	37	45	Right-handed alpha
Helix 96	AK6	7	51	59	Right-handed alpha
Helix 97	AK7	7	60	63	Right-handed 310
Helix 98	AK8	8	29	32	Right-handed 310

There are 50 sheets in PDB entry 8UUA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	33	41	first strand
Strand 2	v	3	10	parallel
Strand 3	v	71	74	parallel
Strand 4	v	94	96	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	238	243	first strand
Strand 2	v	249	254	anti-parallel
Strand 3	v	195	200	parallel
Strand 4	v	282	288	parallel
Strand 5	v	315	320	parallel
Strand 6	v	337	339	parallel
Strand 7	v	332	334	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	364	371	first strand
Strand 2	v	396	403	anti-parallel
Strand 3	v	386	392	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	17	19	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	36	first strand
Strand 2	C	61	63	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	105	first strand
Strand 2	C	91	96	anti-parallel
Strand 3	C	76	82	anti-parallel
Strand 4	C	115	116	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	131	first strand
Strand 2	C	189	192	anti-parallel
Strand 3	C	140	142	anti-parallel
Strand 4	C	162	167	anti-parallel
Strand 5	C	171	175	anti-parallel
Strand 6	C	181	185	anti-parallel
Strand 7	C	270	272	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	248	first strand
Strand 2	C	251	253	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	16	first strand
Strand 2	D	22	29	anti-parallel
Strand 3	D	185	189	anti-parallel
Strand 4	D	168	180	anti-parallel
Strand 5	D	107	113	anti-parallel
Strand 6	D	199	204	anti-parallel
Strand 7	D	4	16	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	83	first strand
Strand 2	D	48	52	anti-parallel
Strand 3	D	33	39	anti-parallel
Strand 4	D	96	97	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	120	first strand
Strand 2	D	162	163	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	126	first strand
Strand 2	E	191	195	parallel
Strand 3	E	152	155	parallel
Strand 4	E	173	176	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	69	first strand
Strand 2	F	84	91	anti-parallel
Strand 3	F	31	37	anti-parallel
Strand 4	F	152	158	anti-parallel
Strand 5	F	128	132	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	10	first strand
Strand 2	G	49	53	anti-parallel
Strand 3	G	42	45	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	20	first strand
Strand 2	G	23	27	anti-parallel
Strand 3	G	32	36	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	121	127	first strand
Strand 2	G	130	135	anti-parallel
Strand 3	G	83	90	anti-parallel
Strand 4	G	161	164	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	98	first strand
Strand 2	G	103	106	anti-parallel
Strand 3	G	113	115	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	123	125	first strand
Strand 2	L	54	58	parallel
Strand 3	L	16	20	parallel
Strand 4	L	139	140	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	74	78	first strand
Strand 2	L	85	89	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	7	10	first strand
Strand 2	M	16	24	anti-parallel
Strand 3	M	38	46	anti-parallel
Strand 4	M	57	64	anti-parallel
Strand 5	M	83	86	anti-parallel
Strand 6	M	7	10	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	69	70	first strand
Strand 2	M	76	79	anti-parallel
Strand 3	R	68	75	anti-parallel
Strand 4	R	58	65	anti-parallel
Strand 5	R	38	51	anti-parallel
Strand 6	R	25	33	anti-parallel
Strand 7	R	81	88	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	102	103	first strand
Strand 2	M	121	122	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	75	77	first strand
Strand 2	N	109	111	parallel
Strand 3	N	127	128	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	90	91	first strand
Strand 2	N	122	125	parallel
Strand 3	N	142	145	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	63	66	first strand
Strand 2	O	102	107	anti-parallel
Strand 3	O	32	36	anti-parallel
Strand 4	O	129	133	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	40	43	first strand
Strand 2	O	89	97	anti-parallel
Strand 3	O	72	76	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	29	33	first strand
Strand 2	P	128	133	anti-parallel
Strand 3	P	115	121	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	70	74	first strand
Strand 2	P	90	93	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	51	57	first strand
Strand 2	Q	40	46	anti-parallel
Strand 3	Q	30	35	anti-parallel
Strand 4	Q	93	95	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	10	14	first strand
Strand 2	T	2	7	anti-parallel
Strand 3	T	38	42	anti-parallel
Strand 4	T	47	48	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	19	22	first strand
Strand 2	T	91	100	anti-parallel
Strand 3	T	58	67	anti-parallel
Strand 4	T	32	35	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	71	77	first strand
Strand 2	T	82	88	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	7	15	first strand
Strand 2	U	106	114	anti-parallel
Strand 3	U	74	83	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	87	92	first strand
Strand 2	U	98	103	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	7	10	first strand
Strand 2	V	24	29	anti-parallel
Strand 3	V	75	82	anti-parallel
Strand 4	V	50	58	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	62	64	first strand
Strand 2	V	69	71	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	63	64	first strand
Strand 2	W	32	35	anti-parallel
Strand 3	W	20	27	anti-parallel
Strand 4	W	8	11	anti-parallel
Strand 5	W	68	71	anti-parallel
Strand 6	W	78	79	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	40	45	first strand
Strand 2	W	55	60	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	81	86	first strand
Strand 2	W	89	94	anti-parallel
Strand 3	W	99	100	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	30	31	first strand
Strand 2	Y	44	47	anti-parallel
Strand 3	Y	67	69	anti-parallel
Strand 4	Y	59	61	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	38	39	first strand
Strand 2	Y	73	78	anti-parallel
Strand 3	Y	86	90	anti-parallel
Strand 4	Y	54	55	parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	13	18	first strand
Strand 2	Z	24	29	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	33	39	first strand
Strand 2	Z	44	50	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	34	37	first strand
Strand 2	2	4	8	anti-parallel
Strand 3	2	54	57	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	22	27	first strand
Strand 2	3	10	16	anti-parallel
Strand 3	3	45	48	parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	27	29	first strand
Strand 2	4	36	38	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	48	49	first strand
Strand 2	4	52	53	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	15	21	first strand
Strand 2	5	3	9	anti-parallel
Strand 3	5	41	47	anti-parallel
Strand 4	5	31	36	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	15	16	first strand
Strand 2	7	22	25	anti-parallel
Strand 3	7	47	49	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	8	2	3	first strand
Strand 2	8	34	35	parallel
Strand 3	8	22	26	anti-parallel
Strand 4	8	15	19	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UUA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UUA