Analysis of interatomic Contacts of Structural Units in PDB entry:
8UUB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UUB entry

There is 1 chain in PDB entry 8UUB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -3ILE 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8UUB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
35 39Right-handed 310
Helix 3
AA3
A
41 46Right-handed alpha
Helix 4
AA4
A
47 59Right-handed alpha
Helix 5
AA5
A
63 89Right-handed alpha
Helix 6
AA6
A
148 153Right-handed 310
Helix 7
AA7
A
166 180Right-handed alpha
Helix 8
AA8
A
197 211Right-handed alpha
Helix 9
AA9
A
255 263Right-handed 310
Helix 10
AB1
A
290 294Right-handed 310
Helix 11
AB2
A
298 315Right-handed alpha
Helix 12
AB3
A
320 324Right-handed 310
Helix 13
AB4
A
343 350Right-handed alpha
Helix 14
AB5
A
364 371Right-handed alpha
Helix 15
AB6
A
397 411Right-handed alpha
Helix 16
AB7
A
414 420Right-handed 310
Helix 17
AB8
A
428 430Right-handed 310
Helix 18
AB9
A
431 436Right-handed alpha
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There are 6 sheets in PDB entry 8UUB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 95first strand
Strand 2
A
29 33parallel
Strand 3
A
2 9parallel
Strand 4
A
113 124parallel
Strand 5
A
105 110anti-parallel
Strand 6
A
99 102anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 95first strand
Strand 2
A
29 33parallel
Strand 3
A
2 9parallel
Strand 4
A
113 124parallel
Strand 5
A
286 288parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
251 253anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
244 247parallel
Strand 3
A
159 163parallel
Strand 4
A
182 186parallel
Strand 5
A
214 216parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 227first strand
Strand 2
A
230 235anti-parallel
Strand 3
A
239 242anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 331first strand
Strand 2
A
337 341anti-parallel
Strand 3
A
388 394anti-parallel
Strand 4
A
376 382anti-parallel
Strand 5
A
354 360anti-parallel
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