Analysis of interatomic Contacts of Structural Units in PDB entry:
8UUD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UUD entry

There are 11 chains in PDB entry 8UUD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 ALA 1LEU 5
L
 LEU 8LEU 13
L
 ARG 15ARG 15
L
 CYS 17LYS 18
L
 GLN 21PHE 24
L
 ALA 27ARG 28
L
 ILE 30ALA 34
L
 ARG 36GLU 142
H
 ILE 16PRO 269
T
 THR 6ALA 80
U
 GLU 91MET 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 8UUD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
L
5 9Right-handed 310
Helix 2
AA2
L
13 18Right-handed alpha
Helix 3
AA3
L
27 32Right-handed alpha
Helix 4
AA4
L
34 45Right-handed alpha
Helix 5
AA5
L
48 53Right-handed 310
Helix 6
AA6
L
86 89Right-handed 310
Helix 7
AA7
L
93 98Right-handed 310
Helix 8
AA8
L
138 142Right-handed 310
Helix 9
AA9
H
54 59Right-handed 310
Helix 10
AB1
H
128 135Right-handed alpha
Helix 11
AB2
H
136 139Right-handed 310
Helix 12
AB3
H
169 175Right-handed alpha
Helix 13
AB4
H
246 255Right-handed alpha
Helix 14
AB5
T
59 64Right-handed alpha
Helix 15
AB6
U
101 106Right-handed alpha
Helix 16
AB7
U
143 148Right-handed alpha
Helix 17
AB8
U
149 151Right-handed 310
Back to top of page

There are 11 sheets in PDB entry 8UUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
60 63first strand
Strand 2
L
68 71anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
76 77first strand
Strand 2
L
83 84anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
101 103first strand
Strand 2
L
111 113anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
118 120first strand
Strand 2
L
127 129anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
20 21first strand
Strand 2
H
161 166anti-parallel
Strand 3
H
141 146anti-parallel
Strand 4
H
210 215anti-parallel
Strand 5
H
218 227anti-parallel
Strand 6
H
238 242anti-parallel
Strand 7
H
190 193anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
263 266first strand
Strand 2
H
84 94parallel
Strand 3
H
107 111anti-parallel
Strand 4
H
50 53anti-parallel
Strand 5
H
38 45anti-parallel
Strand 6
H
30 35anti-parallel
Strand 7
H
67 71anti-parallel
Strand 8
H
84 94anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
10 17first strand
Strand 2
T
20 26anti-parallel
Strand 3
T
56 58anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
46 52first strand
Strand 2
T
32 40anti-parallel
Strand 3
T
71 79anti-parallel
Strand 4
U
93 96anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
113 119first strand
Strand 2
U
122 127anti-parallel
Strand 3
U
174 178anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
131 135first strand
Strand 2
U
140 142anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
166 170first strand
Strand 2
U
152 158anti-parallel
Strand 3
U
186 192anti-parallel
Strand 4
U
208 209anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il