Analysis of interatomic Contacts of Structural Units in PDB entry:
8UUE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UUE entry

There are 4 chains in PDB entry 8UUE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 395	CYS 798
B	SER 511	CYS 913
C	SER 395	CYS 798
D	SER 511	CYS 913

There are 45 helices in PDB entry 8UUE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	458	469	Right-handed alpha
Helix 2	AA2	A	499	507	Right-handed alpha
Helix 3	AA3	A	520	527	Right-handed alpha
Helix 4	AA4	A	669	674	Right-handed alpha
Helix 5	AA5	A	687	696	Right-handed alpha
Helix 6	AA6	A	699	708	Right-handed alpha
Helix 7	AA7	A	715	724	Right-handed alpha
Helix 8	AA8	A	732	742	Right-handed alpha
Helix 9	AA9	A	768	783	Right-handed alpha
Helix 10	AB1	A	783	793	Right-handed alpha
Helix 11	AB2	B	550	562	Right-handed alpha
Helix 12	AB3	B	569	571	Right-handed 310
Helix 13	AB4	B	578	592	Right-handed alpha
Helix 14	AB5	B	614	622	Right-handed alpha
Helix 15	AB6	B	635	640	Right-handed alpha
Helix 16	AB7	B	782	786	Right-handed 310
Helix 17	AB8	B	800	810	Right-handed alpha
Helix 18	AB9	B	813	820	Right-handed alpha
Helix 19	AC1	B	824	833	Right-handed alpha
Helix 20	AC2	B	846	854	Right-handed alpha
Helix 21	AC3	B	881	884	Right-handed 310
Helix 22	AC4	B	885	897	Right-handed alpha
Helix 23	AC5	B	898	906	Right-handed alpha
Helix 24	AC6	C	458	471	Right-handed alpha
Helix 25	AC7	C	499	508	Right-handed alpha
Helix 26	AC8	C	669	674	Right-handed alpha
Helix 27	AC9	C	687	696	Right-handed alpha
Helix 28	AD1	C	700	707	Right-handed alpha
Helix 29	AD2	C	713	723	Right-handed alpha
Helix 30	AD3	C	732	743	Right-handed alpha
Helix 31	AD4	C	769	781	Right-handed alpha
Helix 32	AD5	C	783	793	Right-handed alpha
Helix 33	AD6	D	550	562	Right-handed alpha
Helix 34	AD7	D	569	573	Right-handed 310
Helix 35	AD8	D	578	592	Right-handed alpha
Helix 36	AD9	D	614	622	Right-handed alpha
Helix 37	AE1	D	635	642	Right-handed alpha
Helix 38	AE2	D	782	787	Right-handed alpha
Helix 39	AE3	D	800	810	Right-handed alpha
Helix 40	AE4	D	810	821	Right-handed alpha
Helix 41	AE5	D	824	826	Right-handed 310
Helix 42	AE6	D	827	833	Right-handed alpha
Helix 43	AE7	D	846	856	Right-handed alpha
Helix 44	AE8	D	883	898	Right-handed alpha
Helix 45	AE9	D	898	908	Right-handed alpha

There are 16 sheets in PDB entry 8UUE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	399	first strand
Strand 2	A	474	475	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	453	457	anti-parallel
Strand 3	A	434	436	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	729	731	first strand
Strand 2	A	534	543	anti-parallel
Strand 3	A	746	748	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	729	731	first strand
Strand 2	A	534	543	anti-parallel
Strand 3	A	753	758	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	576	first strand
Strand 2	B	541	544	anti-parallel
Strand 3	B	593	599	parallel
Strand 4	B	513	519	parallel
Strand 5	B	627	628	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	643	644	first strand
Strand 2	B	876	877	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	844	845	first strand
Strand 2	B	653	657	anti-parallel
Strand 3	B	862	864	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	402	first strand
Strand 2	C	474	478	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	434	436	first strand
Strand 2	C	453	455	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	488	489	first strand
Strand 2	C	496	497	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	528	529	first strand
Strand 2	C	761	762	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	536	first strand
Strand 2	C	756	757	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	710	711	first strand
Strand 2	C	681	684	parallel
Strand 3	C	728	730	parallel
Strand 4	C	540	543	anti-parallel
Strand 5	C	746	749	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	543	544	first strand
Strand 2	D	594	598	parallel
Strand 3	D	514	518	parallel
Strand 4	D	627	628	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	643	644	first strand
Strand 2	D	876	877	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	844	845	first strand
Strand 2	D	650	658	anti-parallel
Strand 3	D	861	872	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UUE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UUE