Analysis of interatomic Contacts of Structural Units in PDB entry:
8UV9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UV9 entry

There are 4 chains in PDB entry 8UV9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 5	GLU 552
B	PRO 5	GLU 552
C	PRO 5	GLU 552
D	PRO 5	GLU 552

There are101 helices in PDB entry 8UV9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	38	Right-handed alpha
Helix 2	AA2	A	54	58	Right-handed 310
Helix 3	AA3	A	59	64	Right-handed alpha
Helix 4	AA4	A	77	87	Right-handed alpha
Helix 5	AA5	A	91	93	Right-handed 310
Helix 6	AA6	A	98	111	Right-handed alpha
Helix 7	AA7	A	120	136	Right-handed alpha
Helix 8	AA8	A	162	177	Right-handed alpha
Helix 9	AA9	A	200	213	Right-handed alpha
Helix 10	AB1	A	229	241	Right-handed alpha
Helix 11	AB2	A	243	245	Right-handed 310
Helix 12	AB3	A	255	257	Right-handed 310
Helix 13	AB4	A	258	266	Right-handed alpha
Helix 14	AB5	A	267	276	Right-handed alpha
Helix 15	AB6	A	285	297	Right-handed alpha
Helix 16	AB7	A	314	316	Right-handed 310
Helix 17	AB8	A	317	332	Right-handed alpha
Helix 18	AB9	A	343	346	Right-handed 310
Helix 19	AC1	A	347	356	Right-handed alpha
Helix 20	AC2	A	371	386	Right-handed alpha
Helix 21	AC3	A	393	405	Right-handed alpha
Helix 22	AC4	A	459	466	Right-handed alpha
Helix 23	AC5	A	484	490	Right-handed alpha
Helix 24	AC6	A	524	528	Right-handed 310
Helix 25	AC7	A	535	552	Right-handed alpha
Helix 26	AC8	B	23	38	Right-handed alpha
Helix 27	AC9	B	54	58	Right-handed 310
Helix 28	AD1	B	59	64	Right-handed alpha
Helix 29	AD2	B	77	87	Right-handed alpha
Helix 30	AD3	B	91	93	Right-handed 310
Helix 31	AD4	B	98	111	Right-handed alpha
Helix 32	AD5	B	120	136	Right-handed alpha
Helix 33	AD6	B	159	161	Right-handed 310
Helix 34	AD7	B	162	177	Right-handed alpha
Helix 35	AD8	B	200	213	Right-handed alpha
Helix 36	AD9	B	229	241	Right-handed alpha
Helix 37	AE1	B	243	245	Right-handed 310
Helix 38	AE2	B	255	257	Right-handed 310
Helix 39	AE3	B	258	266	Right-handed alpha
Helix 40	AE4	B	267	276	Right-handed alpha
Helix 41	AE5	B	285	297	Right-handed alpha
Helix 42	AE6	B	314	316	Right-handed 310
Helix 43	AE7	B	317	332	Right-handed alpha
Helix 44	AE8	B	343	346	Right-handed 310
Helix 45	AE9	B	347	356	Right-handed alpha
Helix 46	AF1	B	371	386	Right-handed alpha
Helix 47	AF2	B	393	405	Right-handed alpha
Helix 48	AF3	B	459	466	Right-handed alpha
Helix 49	AF4	B	484	490	Right-handed alpha
Helix 50	AF5	B	524	528	Right-handed 310
Helix 51	AF6	B	535	552	Right-handed alpha
Helix 52	AF7	C	23	38	Right-handed alpha
Helix 53	AF8	C	54	58	Right-handed 310
Helix 54	AF9	C	59	64	Right-handed alpha
Helix 55	AG1	C	77	87	Right-handed alpha
Helix 56	AG2	C	91	93	Right-handed 310
Helix 57	AG3	C	98	111	Right-handed alpha
Helix 58	AG4	C	120	136	Right-handed alpha
Helix 59	AG5	C	162	177	Right-handed alpha
Helix 60	AG6	C	200	213	Right-handed alpha
Helix 61	AG7	C	229	241	Right-handed alpha
Helix 62	AG8	C	243	245	Right-handed 310
Helix 63	AG9	C	255	257	Right-handed 310
Helix 64	AH1	C	258	266	Right-handed alpha
Helix 65	AH2	C	267	276	Right-handed alpha
Helix 66	AH3	C	285	297	Right-handed alpha
Helix 67	AH4	C	314	316	Right-handed 310
Helix 68	AH5	C	317	332	Right-handed alpha
Helix 69	AH6	C	343	346	Right-handed 310
Helix 70	AH7	C	347	356	Right-handed alpha
Helix 71	AH8	C	371	386	Right-handed alpha
Helix 72	AH9	C	393	405	Right-handed alpha
Helix 73	AI1	C	459	466	Right-handed alpha
Helix 74	AI2	C	484	490	Right-handed alpha
Helix 75	AI3	C	524	528	Right-handed 310
Helix 76	AI4	C	535	552	Right-handed alpha
Helix 77	AI5	D	23	38	Right-handed alpha
Helix 78	AI6	D	54	58	Right-handed 310
Helix 79	AI7	D	59	64	Right-handed alpha
Helix 80	AI8	D	77	87	Right-handed alpha
Helix 81	AI9	D	91	93	Right-handed 310
Helix 82	AJ1	D	98	111	Right-handed alpha
Helix 83	AJ2	D	120	136	Right-handed alpha
Helix 84	AJ3	D	162	177	Right-handed alpha
Helix 85	AJ4	D	200	213	Right-handed alpha
Helix 86	AJ5	D	229	241	Right-handed alpha
Helix 87	AJ6	D	243	245	Right-handed 310
Helix 88	AJ7	D	255	257	Right-handed 310
Helix 89	AJ8	D	258	266	Right-handed alpha
Helix 90	AJ9	D	267	276	Right-handed alpha
Helix 91	AK1	D	285	297	Right-handed alpha
Helix 92	AK2	D	314	316	Right-handed 310
Helix 93	AK3	D	317	332	Right-handed alpha
Helix 94	AK4	D	343	346	Right-handed 310
Helix 95	AK5	D	347	356	Right-handed alpha
Helix 96	AK6	D	371	386	Right-handed alpha
Helix 97	AK7	D	393	405	Right-handed alpha
Helix 98	AK8	D	459	466	Right-handed alpha
Helix 99	AK9	D	484	490	Right-handed alpha
Helix 100	AL1	D	524	528	Right-handed 310
Helix 101	AL2	D	535	552	Right-handed alpha

There are 20 sheets in PDB entry 8UV9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	97	first strand
Strand 2	A	42	48	parallel
Strand 3	A	148	153	parallel
Strand 4	A	10	16	parallel
Strand 5	A	181	188	parallel
Strand 6	A	219	224	parallel
Strand 7	A	247	251	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	74	75	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	192	first strand
Strand 2	A	197	198	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	341	first strand
Strand 2	A	300	308	parallel
Strand 3	A	360	363	parallel
Strand 4	A	389	392	parallel
Strand 5	A	518	521	parallel
Strand 6	A	505	509	anti-parallel
Strand 7	A	494	498	anti-parallel
Strand 8	A	447	455	anti-parallel
Strand 9	A	469	476	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	413	414	first strand
Strand 2	A	424	427	parallel
Strand 3	A	479	480	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	97	first strand
Strand 2	B	42	48	parallel
Strand 3	B	148	153	parallel
Strand 4	B	10	16	parallel
Strand 5	B	181	188	parallel
Strand 6	B	219	224	parallel
Strand 7	B	247	251	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	68	first strand
Strand 2	B	74	75	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	197	198	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	341	first strand
Strand 2	B	300	308	parallel
Strand 3	B	360	363	parallel
Strand 4	B	389	392	parallel
Strand 5	B	518	521	parallel
Strand 6	B	505	509	anti-parallel
Strand 7	B	494	498	anti-parallel
Strand 8	B	447	455	anti-parallel
Strand 9	B	469	476	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	413	414	first strand
Strand 2	B	424	427	parallel
Strand 3	B	479	480	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	97	first strand
Strand 2	C	42	48	parallel
Strand 3	C	148	153	parallel
Strand 4	C	10	16	parallel
Strand 5	C	181	188	parallel
Strand 6	C	219	224	parallel
Strand 7	C	247	251	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	68	first strand
Strand 2	C	74	75	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	197	198	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	341	first strand
Strand 2	C	300	308	parallel
Strand 3	C	360	363	parallel
Strand 4	C	389	392	parallel
Strand 5	C	518	521	parallel
Strand 6	C	505	509	anti-parallel
Strand 7	C	494	498	anti-parallel
Strand 8	C	447	455	anti-parallel
Strand 9	C	469	476	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	413	414	first strand
Strand 2	C	424	427	parallel
Strand 3	C	479	480	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	97	first strand
Strand 2	D	42	48	parallel
Strand 3	D	148	153	parallel
Strand 4	D	10	16	parallel
Strand 5	D	181	188	parallel
Strand 6	D	219	224	parallel
Strand 7	D	247	251	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	68	first strand
Strand 2	D	74	75	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	192	first strand
Strand 2	D	197	198	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	341	first strand
Strand 2	D	300	308	parallel
Strand 3	D	360	363	parallel
Strand 4	D	389	392	parallel
Strand 5	D	518	521	parallel
Strand 6	D	505	509	anti-parallel
Strand 7	D	494	498	anti-parallel
Strand 8	D	447	455	anti-parallel
Strand 9	D	469	476	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	413	414	first strand
Strand 2	D	424	427	parallel
Strand 3	D	479	480	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UV9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UV9