Analysis of interatomic Contacts of Structural Units in PDB entry:
8UVL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UVL entry

There is 1 chain in PDB entry 8UVL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 562GLU 964
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 8UVL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
603 607Right-handed 310
Helix 2
AA2
A
609 620Right-handed alpha
Helix 3
AA3
A
649 656Right-handed alpha
Helix 4
AA4
A
657 661Right-handed 310
Helix 5
AA5
A
663 682Right-handed alpha
Helix 6
AA6
A
690 692Right-handed 310
Helix 7
AA7
A
739 743Right-handed 310
Helix 8
AA8
A
753 769Right-handed alpha
Helix 9
AA9
A
777 788Right-handed alpha
Helix 10
AB1
A
799 813Right-handed alpha
Helix 11
AB2
A
816 820Right-handed 310
Helix 12
AB3
A
822 829Right-handed alpha
Helix 13
AB4
A
830 833Right-handed 310
Helix 14
AB5
A
834 850Right-handed alpha
Helix 15
AB6
A
856 864Right-handed alpha
Helix 16
AB7
A
865 871Right-handed alpha
Helix 17
AB8
A
873 878Right-handed 310
Helix 18
AB9
A
879 888Right-handed alpha
Helix 19
AC1
A
896 910Right-handed alpha
Helix 20
AC2
A
911 914Right-handed 310
Helix 21
AC3
A
915 923Right-handed alpha
Helix 22
AC4
A
926 937Right-handed alpha
Helix 23
AC5
A
939 948Right-handed alpha
Helix 24
AC6
A
949 952Right-handed 310
Helix 25
AC7
A
954 958Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 8UVL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 566first strand
Strand 2
A
569 579anti-parallel
Strand 3
A
585 591anti-parallel
Strand 4
A
594 601anti-parallel
Strand 5
A
638 643anti-parallel
Strand 6
A
628 632anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
645 648first strand
Strand 2
A
694 697anti-parallel
Strand 3
A
707 709anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
684 685first strand
Strand 2
A
716 717anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il