Analysis of interatomic Contacts of Structural Units in PDB entry:
8UVW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UVW entry

There are 2 chains in PDB entry 8UVW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 1520	ASP 339
D	SER 97	GLY 3305

There are 20 helices in PDB entry 8UVW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	1535	1542	Right-handed alpha
Helix 2	AA2	B	89	98	Right-handed alpha
Helix 3	AA3	B	106	113	Right-handed alpha
Helix 4	AA4	B	132	144	Right-handed alpha
Helix 5	AA5	B	145	146	Right-handed 310
Helix 6	AA6	B	147	151	Right-handed 310
Helix 7	AA7	B	167	179	Right-handed alpha
Helix 8	AA8	B	181	188	Right-handed alpha
Helix 9	AA9	B	196	211	Right-handed alpha
Helix 10	AB1	B	236	260	Right-handed alpha
Helix 11	AB2	D	106	113	Right-handed alpha
Helix 12	AB3	D	132	144	Right-handed alpha
Helix 13	AB4	D	145	146	Right-handed 310
Helix 14	AB5	D	147	151	Right-handed 310
Helix 15	AB6	D	167	178	Right-handed alpha
Helix 16	AB7	D	181	188	Right-handed alpha
Helix 17	AB8	D	196	214	Right-handed alpha
Helix 18	AB9	D	238	260	Right-handed alpha
Helix 19	AC1	D	290	296	Right-handed alpha
Helix 20	AC2	D	3292	3296	Right-handed 310

There are 4 sheets in PDB entry 8UVW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1525	1526	first strand
Strand 2	B	189	193	anti-parallel
Strand 3	B	156	161	parallel
Strand 4	B	216	222	parallel
Strand 5	B	262	268	parallel
Strand 6	B	122	127	parallel
Strand 7	B	298	304	parallel
Strand 8	B	310	316	anti-parallel
Strand 9	B	324	330	anti-parallel
Strand 10	B	333	335	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	D	189	193	anti-parallel
Strand 3	D	156	161	parallel
Strand 4	D	216	222	parallel
Strand 5	D	262	268	parallel
Strand 6	D	122	127	parallel
Strand 7	D	298	304	parallel
Strand 8	D	310	316	anti-parallel
Strand 9	D	324	330	anti-parallel
Strand 10	D	333	335	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	117	118	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	102	first strand
Strand 2	D	117	118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UVW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UVW