Analysis of interatomic Contacts of Structural Units in PDB entry:
8UVX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UVX entry

There are 4 chains in PDB entry 8UVX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1PRO 220
A
 MET 1LYS 222
C
 A 1 A 21
D
 T 1 T 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8UVX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
9 24Right-handed alpha
Helix 2
AA2
B
32 43Right-handed alpha
Helix 3
AA3
B
59 70Right-handed alpha
Helix 4
AA4
B
83 93Right-handed alpha
Helix 5
AA5
B
104 116Right-handed alpha
Helix 6
AA6
B
149 161Right-handed alpha
Helix 7
AA7
B
167 176Right-handed alpha
Helix 8
AA8
B
184 198Right-handed alpha
Helix 9
AA9
A
9 23Right-handed alpha
Helix 10
AB1
A
32 43Right-handed alpha
Helix 11
AB2
A
59 70Right-handed alpha
Helix 12
AB3
A
83 92Right-handed alpha
Helix 13
AB4
A
104 115Right-handed alpha
Helix 14
AB5
A
149 161Right-handed alpha
Helix 15
AB6
A
167 176Right-handed alpha
Helix 16
AB7
A
178 183Right-handed 310
Helix 17
AB8
A
184 198Right-handed alpha
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There are 6 sheets in PDB entry 8UVX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
2 6parallel
Strand 3
B
47 51parallel
Strand 4
B
74 79parallel
Strand 5
B
97 100parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 126first strand
Strand 2
B
129 132anti-parallel
Strand 3
B
137 140anti-parallel
Strand 4
B
143 145anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
214 217anti-parallel
Strand 3
B
207 210anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
2 6parallel
Strand 3
A
47 51parallel
Strand 4
A
74 79parallel
Strand 5
A
97 100parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
129 132anti-parallel
Strand 3
A
137 140anti-parallel
Strand 4
A
143 145anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
214 217anti-parallel
Strand 3
A
207 210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il