Analysis of interatomic Contacts of Structural Units in PDB entry:
8UW3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UW3 entry

There are 3 chains in PDB entry 8UW3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6ASN 1275
B
 G 1 C 71
C
 G 4 T 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 56 helices in PDB entry 8UW3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 35Right-handed alpha
Helix 2
AA2
A
120 133Right-handed alpha
Helix 3
AA3
A
151 155Right-handed 310
Helix 4
AA4
A
162 175Right-handed alpha
Helix 5
AA5
A
180 185Right-handed alpha
Helix 6
AA6
A
211 216Right-handed alpha
Helix 7
AA7
A
253 258Right-handed 310
Helix 8
AA8
A
259 277Right-handed alpha
Helix 9
AA9
A
283 311Right-handed alpha
Helix 10
AB1
A
311 331Right-handed alpha
Helix 11
AB2
A
333 369Right-handed alpha
Helix 12
AB3
A
374 382Right-handed alpha
Helix 13
AB4
A
403 420Right-handed alpha
Helix 14
AB5
A
425 434Right-handed alpha
Helix 15
AB6
A
442 450Right-handed alpha
Helix 16
AB7
A
454 465Right-handed alpha
Helix 17
AB8
A
478 484Right-handed alpha
Helix 18
AB9
A
484 503Right-handed alpha
Helix 19
AC1
A
526 528Right-handed 310
Helix 20
AC2
A
537 553Right-handed alpha
Helix 21
AC3
A
554 559Right-handed alpha
Helix 22
AC4
A
572 589Right-handed alpha
Helix 23
AC5
A
609 620Right-handed alpha
Helix 24
AC6
A
624 634Right-handed alpha
Helix 25
AC7
A
663 682Right-handed alpha
Helix 26
AC8
A
710 730Right-handed alpha
Helix 27
AC9
A
746 757Right-handed alpha
Helix 28
AD1
A
776 778Right-handed 310
Helix 29
AD2
A
779 798Right-handed alpha
Helix 30
AD3
A
805 828Right-handed alpha
Helix 31
AD4
A
833 849Right-handed alpha
Helix 32
AD5
A
857 863Right-handed alpha
Helix 33
AD6
A
864 868Right-handed 310
Helix 34
AD7
A
874 893Right-handed alpha
Helix 35
AD8
A
897 902Right-handed alpha
Helix 36
AD9
A
932 947Right-handed alpha
Helix 37
AE1
A
962 967Right-handed alpha
Helix 38
AE2
A
970 981Right-handed alpha
Helix 39
AE3
A
984 989Right-handed alpha
Helix 40
AE4
A
990 994Right-handed 310
Helix 41
AE5
A
998 1008Right-handed alpha
Helix 42
AE6
A
1009 1021Right-handed alpha
Helix 43
AE7
A
1022 1031Right-handed alpha
Helix 44
AE8
A
1034 1042Right-handed alpha
Helix 45
AE9
A
1048 1061Right-handed alpha
Helix 46
AF1
A
1067 1076Right-handed alpha
Helix 47
AF2
A
1081 1095Right-handed alpha
Helix 48
AF3
A
1098 1110Right-handed alpha
Helix 49
AF4
A
1115 1124Right-handed alpha
Helix 50
AF5
A
1139 1145Right-handed alpha
Helix 51
AF6
A
1150 1164Right-handed alpha
Helix 52
AF7
A
1172 1178Right-handed alpha
Helix 53
AF8
A
1186 1207Right-handed alpha
Helix 54
AF9
A
1215 1238Right-handed alpha
Helix 55
AG1
A
1239 1258Right-handed alpha
Helix 56
AG2
A
1259 1267Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 8UW3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 65first strand
Strand 2
A
74 78anti-parallel
Strand 3
A
38 42anti-parallel
Strand 4
A
7 14parallel
Strand 5
A
232 238anti-parallel
Strand 6
A
217 223anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 91first strand
Strand 2
A
97 104anti-parallel
Strand 3
A
107 114anti-parallel
Strand 4
A
140 143parallel
Strand 5
A
208 210anti-parallel
Strand 6
A
177 179anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 195first strand
Strand 2
A
200 202anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
530 536first strand
Strand 2
A
512 518anti-parallel
Strand 3
A
640 643parallel
Strand 4
A
646 647anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
704 709first strand
Strand 2
A
594 599anti-parallel
Strand 3
A
739 743anti-parallel
Strand 4
A
760 761parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
689 690first strand
Strand 2
A
693 694anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
765 768first strand
Strand 2
A
771 774anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il