Analysis of interatomic Contacts of Structural Units in PDB entry:
8UW6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UW6 entry

There are 4 chains in PDB entry 8UW6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 4	HIS 383
B	ASN 3	HIS 383
C	LYS 4	HIS 383
D	ASN 3	PHE 117

There are 45 helices in PDB entry 8UW6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	17	Right-handed alpha
Helix 2	AA2	A	32	46	Right-handed alpha
Helix 3	AA3	A	113	125	Right-handed alpha
Helix 4	AA4	A	128	132	Right-handed 310
Helix 5	AA5	A	148	158	Right-handed alpha
Helix 6	AA6	A	198	202	Right-handed 310
Helix 7	AA7	A	204	227	Right-handed alpha
Helix 8	AA8	A	270	289	Right-handed alpha
Helix 9	AA9	A	311	322	Right-handed alpha
Helix 10	AB1	A	333	338	Right-handed alpha
Helix 11	AB2	A	365	382	Right-handed alpha
Helix 12	AB3	B	7	18	Right-handed alpha
Helix 13	AB4	B	32	46	Right-handed alpha
Helix 14	AB5	B	113	125	Right-handed alpha
Helix 15	AB6	B	128	132	Right-handed 310
Helix 16	AB7	B	148	158	Right-handed alpha
Helix 17	AB8	B	198	202	Right-handed 310
Helix 18	AB9	B	204	227	Right-handed alpha
Helix 19	AC1	B	270	289	Right-handed alpha
Helix 20	AC2	B	311	322	Right-handed alpha
Helix 21	AC3	B	333	338	Right-handed alpha
Helix 22	AC4	B	365	382	Right-handed alpha
Helix 23	AC5	C	7	17	Right-handed alpha
Helix 24	AC6	C	25	29	Right-handed 310
Helix 25	AC7	C	32	46	Right-handed alpha
Helix 26	AC8	C	113	125	Right-handed alpha
Helix 27	AC9	C	128	132	Right-handed 310
Helix 28	AD1	C	148	158	Right-handed alpha
Helix 29	AD2	C	198	202	Right-handed 310
Helix 30	AD3	C	204	227	Right-handed alpha
Helix 31	AD4	C	270	289	Right-handed alpha
Helix 32	AD5	C	311	322	Right-handed alpha
Helix 33	AD6	C	333	338	Right-handed alpha
Helix 34	AD7	C	365	382	Right-handed alpha
Helix 35	AD8	D	7	18	Right-handed alpha
Helix 36	AD9	D	32	46	Right-handed alpha
Helix 37	AE1	D	113	125	Right-handed alpha
Helix 38	AE2	D	128	132	Right-handed 310
Helix 39	AE3	D	148	158	Right-handed alpha
Helix 40	AE4	D	198	202	Right-handed 310
Helix 41	AE5	D	204	227	Right-handed alpha
Helix 42	AE6	D	270	289	Right-handed alpha
Helix 43	AE7	D	311	322	Right-handed alpha
Helix 44	AE8	D	333	338	Right-handed alpha
Helix 45	AE9	D	365	382	Right-handed alpha

There are 14 sheets in PDB entry 8UW6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	54	first strand
Strand 2	A	62	68	anti-parallel
Strand 3	A	136	141	anti-parallel
Strand 4	A	75	80	parallel
Strand 5	A	164	167	parallel
Strand 6	A	343	345	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	104	106	anti-parallel
Strand 3	A	360	362	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	306	first strand
Strand 2	A	176	179	anti-parallel
Strand 3	A	326	328	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	297	first strand
Strand 2	A	183	190	anti-parallel
Strand 3	A	256	264	anti-parallel
Strand 4	A	238	246	anti-parallel
Strand 5	B	238	246	anti-parallel
Strand 6	B	256	264	anti-parallel
Strand 7	B	183	190	anti-parallel
Strand 8	B	293	297	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	54	first strand
Strand 2	B	62	68	anti-parallel
Strand 3	B	136	141	anti-parallel
Strand 4	B	75	80	parallel
Strand 5	B	164	167	parallel
Strand 6	B	343	345	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	B	104	106	anti-parallel
Strand 3	B	360	362	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	306	first strand
Strand 2	B	176	179	anti-parallel
Strand 3	B	326	328	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	54	first strand
Strand 2	C	62	68	anti-parallel
Strand 3	C	136	141	anti-parallel
Strand 4	C	75	80	parallel
Strand 5	C	164	167	parallel
Strand 6	C	343	345	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	101	first strand
Strand 2	C	104	106	anti-parallel
Strand 3	C	360	362	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	306	first strand
Strand 2	C	176	179	anti-parallel
Strand 3	C	326	327	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	297	first strand
Strand 2	C	183	190	anti-parallel
Strand 3	C	256	264	anti-parallel
Strand 4	C	238	246	anti-parallel
Strand 5	D	238	246	anti-parallel
Strand 6	D	256	264	anti-parallel
Strand 7	D	183	190	anti-parallel
Strand 8	D	293	297	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	54	first strand
Strand 2	D	62	68	anti-parallel
Strand 3	D	136	141	anti-parallel
Strand 4	D	75	80	parallel
Strand 5	D	164	167	parallel
Strand 6	D	343	345	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	104	106	anti-parallel
Strand 3	D	360	362	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	305	306	first strand
Strand 2	D	176	179	anti-parallel
Strand 3	D	326	328	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UW6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UW6