Analysis of interatomic Contacts of Structural Units in PDB entry:
8UW8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UW8 entry

There are 2 chains in PDB entry 8UW8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 190ALA 933
B
 GLN 74GLY 196
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8UW8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
192 197Right-handed alpha
Helix 2
AA2
A
198 204Right-handed alpha
Helix 3
AA3
A
248 259Right-handed alpha
Helix 4
AA4
A
285 300Right-handed alpha
Helix 5
AA5
A
315 328Right-handed alpha
Helix 6
AA6
A
412 431Right-handed alpha
Helix 7
AA7
A
433 437Right-handed 310
Helix 8
AA8
A
438 450Right-handed alpha
Helix 9
AA9
A
457 462Right-handed alpha
Helix 10
AB1
A
467 478Right-handed alpha
Helix 11
AB2
A
541 543Right-handed 310
Helix 12
AB3
A
570 575Right-handed 310
Helix 13
AB4
A
661 671Right-handed alpha
Helix 14
AB5
A
681 685Right-handed 310
Helix 15
AB6
A
703 717Right-handed alpha
Helix 16
AB7
A
728 735Right-handed alpha
Helix 17
AB8
A
754 763Right-handed alpha
Helix 18
AB9
A
764 766Right-handed 310
Helix 19
AC1
A
810 817Right-handed alpha
Helix 20
AC2
A
859 873Right-handed alpha
Helix 21
AC3
A
876 881Right-handed alpha
Helix 22
AC4
A
904 909Right-handed 310
Helix 23
AC5
B
96 98Right-handed 310
Helix 24
AC6
B
127 136Right-handed alpha
Helix 25
AC7
B
166 173Right-handed alpha
Helix 26
AC8
B
176 178Right-handed 310
Helix 27
AC9
B
188 192Right-handed 310
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There are 9 sheets in PDB entry 8UW8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 236first strand
Strand 2
A
271 276parallel
Strand 3
A
213 218parallel
Strand 4
A
303 306parallel
Strand 5
A
331 335parallel
Strand 6
A
355 362parallel
Strand 7
A
391 401parallel
Strand 8
A
407 411anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 485first strand
Strand 2
A
512 520anti-parallel
Strand 3
A
559 568anti-parallel
Strand 4
A
545 551anti-parallel
Strand 5
A
932 933anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 490first strand
Strand 2
A
603 614parallel
Strand 3
A
577 588anti-parallel
Strand 4
A
527 528anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 506first strand
Strand 2
A
603 614parallel
Strand 3
A
577 588anti-parallel
Strand 4
A
533 536anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
674 678first strand
Strand 2
A
622 626parallel
Strand 3
A
692 696parallel
Strand 4
A
719 723parallel
Strand 5
A
840 844parallel
Strand 6
A
821 832anti-parallel
Strand 7
A
803 809anti-parallel
Strand 8
A
774 780anti-parallel
Strand 9
A
783 790anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
737 739first strand
Strand 2
A
744 746anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 86first strand
Strand 2
B
91 94anti-parallel
Strand 3
B
112 113anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
193 194anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 181first strand
Strand 2
B
185 186anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il