Analysis of interatomic Contacts of Structural Units in PDB entry:
8UWP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UWP entry

There are 2 chains in PDB entry 8UWP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1MET 212
B
 GLU 1MET 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 8UWP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 56Right-handed 310
Helix 2
AA2
A
65 69Right-handed 310
Helix 3
AA3
A
117 119Right-handed 310
Helix 4
AA4
A
130 135Right-handed 310
Helix 5
AA5
A
137 151Right-handed alpha
Helix 6
AA6
A
206 212Right-handed alpha
Helix 7
AA7
B
54 56Right-handed 310
Helix 8
AA8
B
65 69Right-handed 310
Helix 9
AA9
B
117 119Right-handed 310
Helix 10
AB1
B
130 135Right-handed 310
Helix 11
AB2
B
137 151Right-handed alpha
Helix 12
AB3
B
206 212Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 8UWP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
24 35anti-parallel
Strand 3
A
38 45anti-parallel
Strand 4
A
50 53anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
24 35anti-parallel
Strand 3
A
14 18anti-parallel
Strand 4
A
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
9 10anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 116first strand
Strand 2
A
104 108anti-parallel
Strand 3
A
85 94anti-parallel
Strand 4
A
74 80anti-parallel
Strand 5
A
121 123anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 169first strand
Strand 2
A
172 182anti-parallel
Strand 3
A
185 190anti-parallel
Strand 4
A
195 200anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
24 35anti-parallel
Strand 3
B
38 45anti-parallel
Strand 4
B
50 53anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
24 35anti-parallel
Strand 3
B
14 18anti-parallel
Strand 4
B
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
9 10anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 116first strand
Strand 2
B
104 108anti-parallel
Strand 3
B
85 94anti-parallel
Strand 4
B
74 80anti-parallel
Strand 5
B
121 123anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 169first strand
Strand 2
B
172 182anti-parallel
Strand 3
B
185 190anti-parallel
Strand 4
B
195 200anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il