Analysis of interatomic Contacts of Structural Units in PDB entry:
8UX5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UX5 entry

There are 2 chains in PDB entry 8UX5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 449
B
 ASP 3SER 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8UX5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 24Right-handed alpha
Helix 2
AA2
A
26 31Right-handed alpha
Helix 3
AA3
A
40 56Right-handed alpha
Helix 4
AA4
A
56 62Right-handed alpha
Helix 5
AA5
A
67 73Right-handed 310
Helix 6
AA6
A
81 86Right-handed 310
Helix 7
AA7
A
92 114Right-handed alpha
Helix 8
AA8
A
117 146Right-handed alpha
Helix 9
AA9
A
184 188Right-handed 310
Helix 10
AB1
A
198 202Right-handed 310
Helix 11
AB2
A
220 230Right-handed alpha
Helix 12
AB3
A
231 239Right-handed 310
Helix 13
AB4
A
240 248Right-handed alpha
Helix 14
AB5
A
300 311Right-handed alpha
Helix 15
AB6
A
317 327Right-handed alpha
Helix 16
AB7
A
344 348Right-handed 310
Helix 17
AB8
A
363 367Right-handed 310
Helix 18
AB9
A
399 404Right-handed alpha
Helix 19
AC1
A
420 424Right-handed 310
Helix 20
AC2
B
4 25Right-handed alpha
Helix 21
AC3
B
27 31Right-handed 310
Helix 22
AC4
B
40 56Right-handed alpha
Helix 23
AC5
B
56 61Right-handed alpha
Helix 24
AC6
B
69 74Right-handed 310
Helix 25
AC7
B
81 86Right-handed 310
Helix 26
AC8
B
92 114Right-handed alpha
Helix 27
AC9
B
117 146Right-handed alpha
Helix 28
AD1
B
184 188Right-handed 310
Helix 29
AD2
B
198 202Right-handed 310
Helix 30
AD3
B
220 230Right-handed alpha
Helix 31
AD4
B
231 239Right-handed 310
Helix 32
AD5
B
240 249Right-handed alpha
Helix 33
AD6
B
300 312Right-handed alpha
Helix 34
AD7
B
317 327Right-handed alpha
Helix 35
AD8
B
344 348Right-handed 310
Helix 36
AD9
B
399 404Right-handed alpha
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There are 11 sheets in PDB entry 8UX5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 173first strand
Strand 2
A
212 215anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 180first strand
Strand 2
A
205 209anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 252first strand
Strand 2
A
263 264anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 275first strand
Strand 2
A
278 283anti-parallel
Strand 3
A
286 289anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 432first strand
Strand 2
A
410 414anti-parallel
Strand 3
A
380 386anti-parallel
Strand 4
A
441 442parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 173first strand
Strand 2
B
212 215anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 180first strand
Strand 2
B
205 209anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 252first strand
Strand 2
B
263 264anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 275first strand
Strand 2
B
278 283anti-parallel
Strand 3
B
286 289anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 314first strand
Strand 2
B
446 447anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
430 432first strand
Strand 2
B
410 414anti-parallel
Strand 3
B
380 386anti-parallel
Strand 4
B
441 442parallel
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