Analysis of interatomic Contacts of Structural Units in PDB entry:
8UX9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UX9 entry

There are 3 chains in PDB entry 8UX9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3GLU 308
B
 ILE 3ILE 444
C
 ILE 3ILE 444
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8UX9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 18Right-handed alpha
Helix 2
AA2
A
28 42Right-handed alpha
Helix 3
AA3
A
60 64Right-handed 310
Helix 4
AA4
A
65 77Right-handed alpha
Helix 5
AA5
A
120 124Right-handed 310
Helix 6
AA6
A
127 137Right-handed alpha
Helix 7
AA7
A
143 172Right-handed alpha
Helix 8
AA8
A
176 182Right-handed alpha
Helix 9
AA9
A
205 224Right-handed alpha
Helix 10
AB1
A
227 235Right-handed alpha
Helix 11
AB2
A
236 260Right-handed alpha
Helix 12
AB3
A
260 272Right-handed alpha
Helix 13
AB4
A
275 290Right-handed alpha
Helix 14
AB5
A
300 307Right-handed alpha
Helix 15
AB6
B
15 17Right-handed 310
Helix 16
AB7
B
38 51Right-handed alpha
Helix 17
AB8
B
53 60Right-handed 310
Helix 18
AB9
B
102 112Right-handed alpha
Helix 19
AC1
B
126 138Right-handed alpha
Helix 20
AC2
B
152 158Right-handed alpha
Helix 21
AC3
B
176 189Right-handed alpha
Helix 22
AC4
B
199 237Right-handed alpha
Helix 23
AC5
B
252 264Right-handed alpha
Helix 24
AC6
B
265 269Right-handed 310
Helix 25
AC7
B
274 288Right-handed alpha
Helix 26
AC8
B
298 319Right-handed alpha
Helix 27
AC9
B
319 331Right-handed alpha
Helix 28
AD1
B
362 366Right-handed 310
Helix 29
AD2
B
367 381Right-handed alpha
Helix 30
AD3
B
399 412Right-handed alpha
Helix 31
AD4
C
38 52Right-handed alpha
Helix 32
AD5
C
55 60Right-handed 310
Helix 33
AD6
C
102 112Right-handed alpha
Helix 34
AD7
C
125 139Right-handed alpha
Helix 35
AD8
C
151 159Right-handed alpha
Helix 36
AD9
C
178 188Right-handed alpha
Helix 37
AE1
C
199 238Right-handed alpha
Helix 38
AE2
C
250 262Right-handed alpha
Helix 39
AE3
C
273 287Right-handed alpha
Helix 40
AE4
C
299 319Right-handed alpha
Helix 41
AE5
C
319 331Right-handed alpha
Helix 42
AE6
C
362 366Right-handed 310
Helix 43
AE7
C
367 381Right-handed alpha
Helix 44
AE8
C
399 413Right-handed alpha
Helix 45
AE9
C
432 434Right-handed 310
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There are 10 sheets in PDB entry 8UX9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
55 56parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 51first strand
Strand 2
A
21 25parallel
Strand 3
A
83 87parallel
Strand 4
A
113 115parallel
Strand 5
A
109 110anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
101 102anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 189first strand
Strand 2
A
194 196anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 23first strand
Strand 2
B
6 14anti-parallel
Strand 3
B
64 69anti-parallel
Strand 4
B
76 82anti-parallel
Strand 5
B
85 91anti-parallel
Strand 6
B
97 101anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 148first strand
Strand 2
B
388 392parallel
Strand 3
B
419 422parallel
Strand 4
B
28 32parallel
Strand 5
B
436 438parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 341first strand
Strand 2
B
350 354anti-parallel
Strand 3
B
360 361anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 101first strand
Strand 2
C
85 91anti-parallel
Strand 3
C
74 82anti-parallel
Strand 4
C
64 69anti-parallel
Strand 5
C
6 14anti-parallel
Strand 6
C
18 23anti-parallel
Strand 7
C
442 443anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
147 148first strand
Strand 2
C
389 392parallel
Strand 3
C
419 422parallel
Strand 4
C
28 32parallel
Strand 5
C
436 438parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
337 341first strand
Strand 2
C
350 354anti-parallel
Strand 3
C
360 361anti-parallel
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