Analysis of interatomic Contacts of Structural Units in PDB entry:
8UXQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UXQ entry

There are 12 chains in PDB entry 8UXQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 1	SER 170
C	VAL 171	ARG 320
E	GLY 321	ALA 423
F	ARG 424	GLY 509
G	ALA 510	GLY 616
H	LYS 617	LYS 711
K	PRO 712	ALA 804
L	ARG 805	GLY 884
M	ALA 885	ILE 987
N	LYS 988	LYS 1082
I	C 1083	G 1179
J	C 1180	G 1276

There are 40 helices in PDB entry 8UXQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	28	Right-handed 310
Helix 2	AA2	A	38	54	Right-handed alpha
Helix 3	AA3	A	134	139	Right-handed alpha
Helix 4	AA4	A	139	147	Right-handed alpha
Helix 5	AA5	A	156	165	Right-handed alpha
Helix 6	AA6	A	165	170	Right-handed alpha
Helix 7	AA7	C	209	225	Right-handed alpha
Helix 8	AA8	C	309	318	Right-handed alpha
Helix 9	AA9	E	333	342	Right-handed alpha
Helix 10	AB1	E	352	364	Right-handed alpha
Helix 11	AB2	E	375	402	Right-handed alpha
Helix 12	AB3	E	410	420	Right-handed alpha
Helix 13	AB4	F	437	445	Right-handed alpha
Helix 14	AB5	F	456	483	Right-handed alpha
Helix 15	AB6	F	491	499	Right-handed alpha
Helix 16	AB7	G	512	518	Right-handed alpha
Helix 17	AB8	G	523	534	Right-handed alpha
Helix 18	AB9	G	545	565	Right-handed alpha
Helix 19	AC1	G	576	586	Right-handed alpha
Helix 20	AC2	G	589	594	Right-handed alpha
Helix 21	AC3	H	624	635	Right-handed alpha
Helix 22	AC4	H	643	666	Right-handed alpha
Helix 23	AC5	H	677	688	Right-handed alpha
Helix 24	AC6	H	693	708	Right-handed alpha
Helix 25	AC7	K	714	725	Right-handed alpha
Helix 26	AC8	K	733	748	Right-handed alpha
Helix 27	AC9	K	755	779	Right-handed alpha
Helix 28	AD1	K	789	801	Right-handed alpha
Helix 29	AD2	L	806	810	Right-handed 310
Helix 30	AD3	L	812	821	Right-handed alpha
Helix 31	AD4	L	831	858	Right-handed alpha
Helix 32	AD5	L	864	875	Right-handed alpha
Helix 33	AD6	M	901	906	Right-handed alpha
Helix 34	AD7	M	916	941	Right-handed alpha
Helix 35	AD8	M	953	958	Right-handed 310
Helix 36	AD9	M	962	967	Right-handed alpha
Helix 37	AE1	N	995	1000	Right-handed alpha
Helix 38	AE2	N	1015	1035	Right-handed alpha
Helix 39	AE3	N	1048	1059	Right-handed alpha
Helix 40	AE4	N	1067	1077	Right-handed alpha

There are 5 sheets in PDB entry 8UXQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	A	13	14	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	180	first strand
Strand 2	C	183	187	anti-parallel
Strand 3	C	200	201	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	276	first strand
Strand 2	C	288	291	anti-parallel
Strand 3	C	297	299	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	371	372	first strand
Strand 2	F	487	488	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	914	915	first strand
Strand 2	N	1045	1046	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UXQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UXQ