Analysis of interatomic Contacts of Structural Units in PDB entry:
8UY0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UY0 entry

There are 5 chains in PDB entry 8UY0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8GLY 305
N
 GLN 1VAL 126
X
 ASN 14LEU 394
Y
 GLU 3ASN 340
Z
 ALA 7ARG 62
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8UY0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 21Right-handed 310
Helix 2
AA2
A
22 50Right-handed alpha
Helix 3
AA3
A
56 87Right-handed alpha
Helix 4
AA4
A
92 127Right-handed alpha
Helix 5
AA5
A
130 135Right-handed alpha
Helix 6
AA6
A
136 164Right-handed alpha
Helix 7
AA7
A
179 185Right-handed alpha
Helix 8
AA8
A
191 226Right-handed alpha
Helix 9
AA9
A
232 259Right-handed alpha
Helix 10
AB1
A
266 279Right-handed alpha
Helix 11
AB2
A
279 290Right-handed alpha
Helix 12
AB3
A
293 305Right-handed alpha
Helix 13
AB4
N
28 32Right-handed 310
Helix 14
AB5
N
87 91Right-handed 310
Helix 15
AB6
X
15 40Right-handed alpha
Helix 16
AB7
X
52 60Right-handed alpha
Helix 17
AB8
X
235 239Right-handed 310
Helix 18
AB9
X
265 278Right-handed alpha
Helix 19
AC1
X
293 303Right-handed alpha
Helix 20
AC2
X
307 311Right-handed 310
Helix 21
AC3
X
312 318Right-handed 310
Helix 22
AC4
X
332 351Right-handed alpha
Helix 23
AC5
X
370 391Right-handed alpha
Helix 24
AC6
Y
4 26Right-handed alpha
Helix 25
AC7
Y
29 35Right-handed alpha
Helix 26
AC8
Z
8 24Right-handed alpha
Helix 27
AC9
Z
29 44Right-handed alpha
Helix 28
AD1
Z
45 48Right-handed 310
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There are 11 sheets in PDB entry 8UY0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
11 13anti-parallel
Strand 3
A
172 173parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
3 7first strand
Strand 2
N
17 25anti-parallel
Strand 3
N
78 84anti-parallel
Strand 4
N
69 73anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
58 60first strand
Strand 2
N
45 51anti-parallel
Strand 3
N
34 39anti-parallel
Strand 4
N
92 98anti-parallel
Strand 5
N
122 124anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
207 214first strand
Strand 2
X
217 224anti-parallel
Strand 3
X
41 46parallel
Strand 4
X
243 249parallel
Strand 5
X
286 292parallel
Strand 6
X
359 363parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
47 51first strand
Strand 2
Y
336 339anti-parallel
Strand 3
Y
327 331anti-parallel
Strand 4
Y
315 320anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
58 63first strand
Strand 2
Y
70 74anti-parallel
Strand 3
Y
78 82anti-parallel
Strand 4
Y
89 94anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
102 105first strand
Strand 2
Y
111 115anti-parallel
Strand 3
Y
121 125anti-parallel
Strand 4
Y
134 139anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
146 151first strand
Strand 2
Y
156 161anti-parallel
Strand 3
Y
165 170anti-parallel
Strand 4
Y
176 181anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
187 192first strand
Strand 2
Y
198 203anti-parallel
Strand 3
Y
207 212anti-parallel
Strand 4
Y
218 223anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
229 234first strand
Strand 2
Y
240 245anti-parallel
Strand 3
Y
250 254anti-parallel
Strand 4
Y
259 264anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
273 278first strand
Strand 2
Y
284 289anti-parallel
Strand 3
Y
294 298anti-parallel
Strand 4
Y
304 307anti-parallel
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