Analysis of interatomic Contacts of Structural Units in PDB entry:
8UY2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UY2 entry

There are 2 chains in PDB entry 8UY2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PRO 593
B	SER -2	THR 83

There are 94 helices in PDB entry 8UY2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	14	Right-handed alpha
Helix 2	AA2	A	27	43	Right-handed alpha
Helix 3	AA3	A	59	73	Right-handed alpha
Helix 4	AA4	A	88	103	Right-handed alpha
Helix 5	AA5	A	117	120	Right-handed 310
Helix 6	AA6	A	121	126	Right-handed alpha
Helix 7	AA7	A	130	143	Right-handed alpha
Helix 8	AA8	A	162	176	Right-handed alpha
Helix 9	AA9	A	188	202	Right-handed alpha
Helix 10	AB1	A	217	228	Right-handed alpha
Helix 11	AB2	A	233	241	Right-handed alpha
Helix 12	AB3	A	242	244	Right-handed 310
Helix 13	AB4	A	246	268	Right-handed alpha
Helix 14	AB5	A	281	291	Right-handed alpha
Helix 15	AB6	A	344	348	Right-handed 310
Helix 16	AB7	A	368	377	Right-handed alpha
Helix 17	AB8	A	381	394	Right-handed alpha
Helix 18	AB9	A	408	413	Right-handed 310
Helix 19	AC1	A	414	424	Right-handed alpha
Helix 20	AC2	A	468	478	Right-handed alpha
Helix 21	AC3	A	522	542	Right-handed alpha
Helix 22	AC4	A	548	561	Right-handed alpha
Helix 23	AC5	A	575	581	Right-handed alpha
Helix 24	AC6	B	2	14	Right-handed alpha
Helix 25	AC7	B	27	43	Right-handed alpha
Helix 26	AC8	B	54	58	Right-handed 310
Helix 27	AC9	B	59	73	Right-handed alpha
Helix 28	AD1	B	88	103	Right-handed alpha
Helix 29	AD2	B	121	126	Right-handed alpha
Helix 30	AD3	B	130	143	Right-handed alpha
Helix 31	AD4	B	164	176	Right-handed alpha
Helix 32	AD5	B	188	202	Right-handed alpha
Helix 33	AD6	B	217	228	Right-handed alpha
Helix 34	AD7	B	233	241	Right-handed alpha
Helix 35	AD8	B	242	244	Right-handed 310
Helix 36	AD9	B	246	268	Right-handed alpha
Helix 37	AE1	B	281	291	Right-handed alpha
Helix 38	AE2	B	344	348	Right-handed 310
Helix 39	AE3	B	359	363	Right-handed 310
Helix 40	AE4	B	368	377	Right-handed alpha
Helix 41	AE5	B	381	394	Right-handed alpha
Helix 42	AE6	B	408	413	Right-handed 310
Helix 43	AE7	B	414	424	Right-handed alpha
Helix 44	AE8	B	468	478	Right-handed alpha
Helix 45	AE9	B	522	542	Right-handed alpha
Helix 46	AF1	B	548	561	Right-handed alpha
Helix 47	AF2	B	575	581	Right-handed alpha
Helix 48	AF3	C	2	14	Right-handed alpha
Helix 49	AF4	C	27	43	Right-handed alpha
Helix 50	AF5	C	54	58	Right-handed 310
Helix 51	AF6	C	59	73	Right-handed alpha
Helix 52	AF7	C	88	103	Right-handed alpha
Helix 53	AF8	C	117	121	Right-handed 310
Helix 54	AF9	C	122	127	Right-handed alpha
Helix 55	AG1	C	130	143	Right-handed alpha
Helix 56	AG2	C	164	176	Right-handed alpha
Helix 57	AG3	C	188	202	Right-handed alpha
Helix 58	AG4	C	217	228	Right-handed alpha
Helix 59	AG5	C	233	241	Right-handed alpha
Helix 60	AG6	C	242	244	Right-handed 310
Helix 61	AG7	C	246	268	Right-handed alpha
Helix 62	AG8	C	281	291	Right-handed alpha
Helix 63	AG9	C	344	348	Right-handed 310
Helix 64	AH1	C	368	375	Right-handed alpha
Helix 65	AH2	C	381	394	Right-handed alpha
Helix 66	AH3	C	408	413	Right-handed 310
Helix 67	AH4	C	414	424	Right-handed alpha
Helix 68	AH5	C	468	478	Right-handed alpha
Helix 69	AH6	C	522	542	Right-handed alpha
Helix 70	AH7	C	548	561	Right-handed alpha
Helix 71	AH8	C	575	581	Right-handed alpha
Helix 72	AH9	D	2	14	Right-handed alpha
Helix 73	AI1	D	27	43	Right-handed alpha
Helix 74	AI2	D	59	73	Right-handed alpha
Helix 75	AI3	D	88	103	Right-handed alpha
Helix 76	AI4	D	117	120	Right-handed 310
Helix 77	AI5	D	121	126	Right-handed alpha
Helix 78	AI6	D	130	143	Right-handed alpha
Helix 79	AI7	D	162	176	Right-handed alpha
Helix 80	AI8	D	188	202	Right-handed alpha
Helix 81	AI9	D	217	228	Right-handed alpha
Helix 82	AJ1	D	233	241	Right-handed alpha
Helix 83	AJ2	D	242	244	Right-handed 310
Helix 84	AJ3	D	246	268	Right-handed alpha
Helix 85	AJ4	D	281	291	Right-handed alpha
Helix 86	AJ5	D	344	348	Right-handed 310
Helix 87	AJ6	D	368	377	Right-handed alpha
Helix 88	AJ7	D	381	394	Right-handed alpha
Helix 89	AJ8	D	408	413	Right-handed 310
Helix 90	AJ9	D	414	424	Right-handed alpha
Helix 91	AK1	D	468	478	Right-handed alpha
Helix 92	AK2	D	522	542	Right-handed alpha
Helix 93	AK3	D	548	561	Right-handed alpha
Helix 94	AK4	D	575	581	Right-handed alpha

There are 12 sheets in PDB entry 8UY2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	22	first strand
Strand 2	A	48	51	parallel
Strand 3	A	78	82	parallel
Strand 4	A	106	109	parallel
Strand 5	A	147	152	parallel
Strand 6	A	180	185	parallel
Strand 7	A	208	212	parallel
Strand 8	A	272	276	parallel
Strand 9	A	17	22	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	432	first strand
Strand 2	A	458	464	anti-parallel
Strand 3	A	562	568	anti-parallel
Strand 4	A	482	487	anti-parallel
Strand 5	A	494	495	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	439	first strand
Strand 2	A	453	456	anti-parallel
Strand 3	A	503	509	anti-parallel
Strand 4	A	516	521	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	22	first strand
Strand 2	B	48	51	parallel
Strand 3	B	78	82	parallel
Strand 4	B	106	109	parallel
Strand 5	B	147	152	parallel
Strand 6	B	180	185	parallel
Strand 7	B	208	212	parallel
Strand 8	B	272	276	parallel
Strand 9	B	17	22	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	432	first strand
Strand 2	B	458	464	anti-parallel
Strand 3	B	562	568	anti-parallel
Strand 4	B	482	487	anti-parallel
Strand 5	B	494	495	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	439	first strand
Strand 2	B	453	456	anti-parallel
Strand 3	B	503	509	anti-parallel
Strand 4	B	516	521	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	22	first strand
Strand 2	C	48	51	parallel
Strand 3	C	78	82	parallel
Strand 4	C	106	109	parallel
Strand 5	C	147	152	parallel
Strand 6	C	180	185	parallel
Strand 7	C	208	212	parallel
Strand 8	C	272	276	parallel
Strand 9	C	17	22	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	427	432	first strand
Strand 2	C	458	464	anti-parallel
Strand 3	C	562	568	anti-parallel
Strand 4	C	482	487	anti-parallel
Strand 5	C	494	495	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	435	439	first strand
Strand 2	C	453	456	anti-parallel
Strand 3	C	503	509	anti-parallel
Strand 4	C	516	521	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	22	first strand
Strand 2	D	48	51	parallel
Strand 3	D	78	82	parallel
Strand 4	D	106	109	parallel
Strand 5	D	147	152	parallel
Strand 6	D	180	185	parallel
Strand 7	D	208	212	parallel
Strand 8	D	272	276	parallel
Strand 9	D	17	22	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	427	432	first strand
Strand 2	D	458	464	anti-parallel
Strand 3	D	562	568	anti-parallel
Strand 4	D	482	487	anti-parallel
Strand 5	D	494	495	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	439	first strand
Strand 2	D	453	456	anti-parallel
Strand 3	D	503	509	anti-parallel
Strand 4	D	516	521	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UY2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UY2