Analysis of interatomic Contacts of Structural Units in PDB entry:
8UY3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UY3 entry

There are 11 chains in PDB entry 8UY3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -1	GLN 375
C	SER -1	GLN 375
B	SER 0	GLN 375
D	GLY 3	LYS 376
E	THR 15	GLY 31
F	THR 15	GLY 31
J	ASP 62	PRO 127
K	ALA 65	PRO 127
H	THR 17	PRO 28
I	PRO 18	PRO 28
M	VAL 66	LEU 126

There are 99 helices in PDB entry 8UY3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	-1	15	Right-handed alpha
Helix 2	AA2	A	16	24	Right-handed alpha
Helix 3	AA3	A	28	38	Right-handed alpha
Helix 4	AA4	A	48	57	Right-handed alpha
Helix 5	AA5	A	58	68	Right-handed alpha
Helix 6	AA6	A	90	99	Right-handed alpha
Helix 7	AA7	A	100	110	Right-handed alpha
Helix 8	AA8	A	123	132	Right-handed alpha
Helix 9	AA9	A	133	143	Right-handed alpha
Helix 10	AB1	A	156	165	Right-handed alpha
Helix 11	AB2	A	166	176	Right-handed alpha
Helix 12	AB3	A	189	198	Right-handed alpha
Helix 13	AB4	A	199	209	Right-handed alpha
Helix 14	AB5	A	221	229	Right-handed alpha
Helix 15	AB6	A	231	242	Right-handed alpha
Helix 16	AB7	A	245	260	Right-handed alpha
Helix 17	AB8	A	268	284	Right-handed alpha
Helix 18	AB9	A	310	317	Right-handed alpha
Helix 19	AC1	A	320	337	Right-handed alpha
Helix 20	AC2	A	343	357	Right-handed alpha
Helix 21	AC3	A	359	375	Right-handed alpha
Helix 22	AC4	C	1	15	Right-handed alpha
Helix 23	AC5	C	16	24	Right-handed alpha
Helix 24	AC6	C	28	36	Right-handed alpha
Helix 25	AC7	C	48	56	Right-handed alpha
Helix 26	AC8	C	58	69	Right-handed alpha
Helix 27	AC9	C	90	99	Right-handed alpha
Helix 28	AD1	C	100	110	Right-handed alpha
Helix 29	AD2	C	123	132	Right-handed alpha
Helix 30	AD3	C	133	143	Right-handed alpha
Helix 31	AD4	C	156	165	Right-handed alpha
Helix 32	AD5	C	166	176	Right-handed alpha
Helix 33	AD6	C	189	197	Right-handed alpha
Helix 34	AD7	C	199	209	Right-handed alpha
Helix 35	AD8	C	221	229	Right-handed alpha
Helix 36	AD9	C	231	241	Right-handed alpha
Helix 37	AE1	C	245	261	Right-handed alpha
Helix 38	AE2	C	268	284	Right-handed alpha
Helix 39	AE3	C	299	303	Right-handed 310
Helix 40	AE4	C	310	317	Right-handed alpha
Helix 41	AE5	C	320	337	Right-handed alpha
Helix 42	AE6	C	344	357	Right-handed alpha
Helix 43	AE7	C	359	375	Right-handed alpha
Helix 44	AE8	B	1	14	Right-handed alpha
Helix 45	AE9	B	16	24	Right-handed alpha
Helix 46	AF1	B	28	37	Right-handed alpha
Helix 47	AF2	B	41	45	Right-handed 310
Helix 48	AF3	B	48	57	Right-handed alpha
Helix 49	AF4	B	58	69	Right-handed alpha
Helix 50	AF5	B	91	99	Right-handed alpha
Helix 51	AF6	B	100	110	Right-handed alpha
Helix 52	AF7	B	123	132	Right-handed alpha
Helix 53	AF8	B	133	143	Right-handed alpha
Helix 54	AF9	B	156	164	Right-handed alpha
Helix 55	AG1	B	166	176	Right-handed alpha
Helix 56	AG2	B	189	198	Right-handed alpha
Helix 57	AG3	B	199	209	Right-handed alpha
Helix 58	AG4	B	221	229	Right-handed alpha
Helix 59	AG5	B	231	242	Right-handed alpha
Helix 60	AG6	B	245	260	Right-handed alpha
Helix 61	AG7	B	268	284	Right-handed alpha
Helix 62	AG8	B	310	317	Right-handed alpha
Helix 63	AG9	B	320	337	Right-handed alpha
Helix 64	AH1	B	344	357	Right-handed alpha
Helix 65	AH2	B	359	375	Right-handed alpha
Helix 66	AH3	D	4	13	Right-handed alpha
Helix 67	AH4	D	16	24	Right-handed alpha
Helix 68	AH5	D	28	38	Right-handed alpha
Helix 69	AH6	D	48	57	Right-handed alpha
Helix 70	AH7	D	58	69	Right-handed alpha
Helix 71	AH8	D	91	99	Right-handed alpha
Helix 72	AH9	D	100	110	Right-handed alpha
Helix 73	AI1	D	123	132	Right-handed alpha
Helix 74	AI2	D	133	143	Right-handed alpha
Helix 75	AI3	D	156	164	Right-handed alpha
Helix 76	AI4	D	166	177	Right-handed alpha
Helix 77	AI5	D	189	197	Right-handed alpha
Helix 78	AI6	D	199	209	Right-handed alpha
Helix 79	AI7	D	221	229	Right-handed alpha
Helix 80	AI8	D	231	239	Right-handed alpha
Helix 81	AI9	D	245	260	Right-handed alpha
Helix 82	AJ1	D	268	284	Right-handed alpha
Helix 83	AJ2	D	299	303	Right-handed 310
Helix 84	AJ3	D	310	317	Right-handed alpha
Helix 85	AJ4	D	320	337	Right-handed alpha
Helix 86	AJ5	D	344	357	Right-handed alpha
Helix 87	AJ6	D	359	376	Right-handed alpha
Helix 88	AJ7	J	63	84	Right-handed alpha
Helix 89	AJ8	J	85	99	Right-handed alpha
Helix 90	AJ9	J	103	114	Right-handed alpha
Helix 91	AK1	J	115	125	Right-handed alpha
Helix 92	AK2	K	66	84	Right-handed alpha
Helix 93	AK3	K	85	99	Right-handed alpha
Helix 94	AK4	K	103	113	Right-handed alpha
Helix 95	AK5	K	115	126	Right-handed alpha
Helix 96	AK6	M	67	84	Right-handed alpha
Helix 97	AK7	M	85	101	Right-handed alpha
Helix 98	AK8	M	106	114	Right-handed alpha
Helix 99	AK9	M	115	126	Right-handed alpha

There are 6 sheets in PDB entry 8UY3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	81	first strand
Strand 2	A	84	89	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	42	first strand
Strand 2	C	45	47	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	81	first strand
Strand 2	C	84	89	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	81	first strand
Strand 2	B	84	90	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	42	first strand
Strand 2	D	45	47	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	81	first strand
Strand 2	D	84	90	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UY3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UY3