Analysis of interatomic Contacts of Structural Units in PDB entry:
8UY4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UY4 entry

There are 5 chains in PDB entry 8UY4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 14LEU 1395
D
 UNK 4UNK 32
C
 UNK 2UNK 12
E
 UNK 3UNK 46
B
 UNK 2UNK 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8UY4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 48Right-handed alpha
Helix 2
AA2
A
51 57Right-handed alpha
Helix 3
AA3
A
66 83Right-handed alpha
Helix 4
AA4
A
87 103Right-handed alpha
Helix 5
AA5
A
108 110Right-handed 310
Helix 6
AA6
A
111 130Right-handed alpha
Helix 7
AA7
A
137 150Right-handed alpha
Helix 8
AA8
A
155 166Right-handed alpha
Helix 9
AA9
A
166 183Right-handed alpha
Helix 10
AB1
A
216 226Right-handed alpha
Helix 11
AB2
A
244 261Right-handed alpha
Helix 12
AB3
A
262 264Right-handed 310
Helix 13
AB4
A
270 286Right-handed alpha
Helix 14
AB5
A
299 307Right-handed alpha
Helix 15
AB6
A
367 371Right-handed 310
Helix 16
AB7
A
407 412Right-handed 310
Helix 17
AB8
A
1268 1281Right-handed alpha
Helix 18
AB9
A
1330 1334Right-handed 310
Helix 19
AC1
A
1360 1363Right-handed 310
Helix 20
AC2
A
1371 1375Right-handed 310
Helix 21
AC3
D
13 18Right-handed alpha
Helix 22
AC4
C
4 12Right-handed alpha
Helix 23
AC5
E
17 23Right-handed alpha
Helix 24
AC6
E
38 42Right-handed 310
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There are 17 sheets in PDB entry 8UY4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
310 313anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
212 213anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 351first strand
Strand 2
A
358 363anti-parallel
Strand 3
A
379 380anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 406first strand
Strand 2
A
394 397anti-parallel
Strand 3
A
386 389anti-parallel
Strand 4
A
452 460anti-parallel
Strand 5
A
440 446anti-parallel
Strand 6
A
432 435anti-parallel
Strand 7
A
423 425anti-parallel
Strand 8
A
415 416anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 474first strand
Strand 2
A
477 485anti-parallel
Strand 3
A
493 498anti-parallel
Strand 4
A
504 507anti-parallel
Strand 5
A
517 521anti-parallel
Strand 6
A
527 531anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 542first strand
Strand 2
A
548 551anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
559 563first strand
Strand 2
A
572 577anti-parallel
Strand 3
A
584 585anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 596first strand
Strand 2
A
606 609anti-parallel
Strand 3
A
615 619anti-parallel
Strand 4
A
625 627anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
629 630first strand
Strand 2
A
636 640anti-parallel
Strand 3
A
646 648anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
669 672first strand
Strand 2
A
678 682anti-parallel
Strand 3
A
688 693anti-parallel
Strand 4
A
699 703anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
711 715first strand
Strand 2
A
719 724anti-parallel
Strand 3
A
730 735anti-parallel
Strand 4
A
741 745anti-parallel
Strand 5
A
751 752anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
754 756first strand
Strand 2
A
762 766anti-parallel
Strand 3
A
772 777anti-parallel
Strand 4
A
787 791anti-parallel
Strand 5
A
797 799anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
810 812first strand
Strand 2
A
818 823anti-parallel
Strand 3
A
829 833anti-parallel
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There are 14 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
841 844first strand
Strand 2
A
850 854anti-parallel
Strand 3
A
860 865anti-parallel
Strand 4
A
871 875anti-parallel
Strand 5
A
881 886anti-parallel
Strand 6
A
892 896anti-parallel
Strand 7
A
900 906anti-parallel
Strand 8
A
912 919anti-parallel
Strand 9
A
925 932anti-parallel
Strand 10
A
938 943anti-parallel
Strand 11
A
946 952anti-parallel
Strand 12
A
958 965anti-parallel
Strand 13
A
973 978anti-parallel
Strand 14
A
1252 1253anti-parallel
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There are 13 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
980 981first strand
Strand 2
A
987 991anti-parallel
Strand 3
A
997 1003anti-parallel
Strand 4
A
1007 1012anti-parallel
Strand 5
A
1017 1023anti-parallel
Strand 6
A
1029 1034anti-parallel
Strand 7
A
1038 1044anti-parallel
Strand 8
A
1050 1057anti-parallel
Strand 9
A
1069 1075anti-parallel
Strand 10
A
1081 1086anti-parallel
Strand 11
A
1090 1096anti-parallel
Strand 12
A
1102 1106anti-parallel
Strand 13
A
1112 1113anti-parallel
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There are 15 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1141 1142first strand
Strand 2
A
1145 1149anti-parallel
Strand 3
A
1155 1160anti-parallel
Strand 4
A
1163 1169anti-parallel
Strand 5
A
1175 1180anti-parallel
Strand 6
A
1183 1189anti-parallel
Strand 7
A
1195 1200anti-parallel
Strand 8
A
1203 1209anti-parallel
Strand 9
A
1214 1220anti-parallel
Strand 10
A
1226 1232anti-parallel
Strand 11
A
1239 1245anti-parallel
Strand 12
A
1286 1292anti-parallel
Strand 13
A
1298 1303anti-parallel
Strand 14
A
1308 1314anti-parallel
Strand 15
A
1320 1325anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1351 1352first strand
Strand 2
A
1357 1359anti-parallel
Strand 3
A
1364 1365anti-parallel
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