Analysis of interatomic Contacts of Structural Units in PDB entry:
8UY9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UY9 entry

There is 1 chain in PDB entry 8UY9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 34SER 892
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8UY9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 48Right-handed alpha
Helix 2
AA2
A
52 57Right-handed alpha
Helix 3
AA3
A
65 77Right-handed alpha
Helix 4
AA4
A
88 96Right-handed alpha
Helix 5
AA5
A
99 115Right-handed alpha
Helix 6
AA6
A
117 146Right-handed alpha
Helix 7
AA7
A
177 179Right-handed 310
Helix 8
AA8
A
258 262Right-handed 310
Helix 9
AA9
A
279 310Right-handed alpha
Helix 10
AB1
A
313 328Right-handed alpha
Helix 11
AB2
A
332 350Right-handed alpha
Helix 12
AB3
A
357 367Right-handed alpha
Helix 13
AB4
A
397 409Right-handed alpha
Helix 14
AB5
A
415 425Right-handed alpha
Helix 15
AB6
A
426 437Right-handed alpha
Helix 16
AB7
A
470 477Right-handed alpha
Helix 17
AB8
A
491 509Right-handed alpha
Helix 18
AB9
A
528 532Right-handed 310
Helix 19
AC1
A
550 561Right-handed alpha
Helix 20
AC2
A
572 584Right-handed alpha
Helix 21
AC3
A
593 599Right-handed alpha
Helix 22
AC4
A
600 610Right-handed alpha
Helix 23
AC5
A
618 630Right-handed alpha
Helix 24
AC6
A
642 644Right-handed 310
Helix 25
AC7
A
645 652Right-handed alpha
Helix 26
AC8
A
662 668Right-handed alpha
Helix 27
AC9
A
677 716Right-handed alpha
Helix 28
AD1
A
726 741Right-handed alpha
Helix 29
AD2
A
742 747Right-handed 310
Helix 30
AD3
A
752 756Right-handed 310
Helix 31
AD4
A
761 790Right-handed alpha
Helix 32
AD5
A
795 797Right-handed 310
Helix 33
AD6
A
798 822Right-handed alpha
Helix 34
AD7
A
834 851Right-handed alpha
Helix 35
AD8
A
855 860Right-handed alpha
Helix 36
AD9
A
868 889Right-handed alpha
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There are 6 sheets in PDB entry 8UY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 159first strand
Strand 2
A
172 175anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 187first strand
Strand 2
A
245 255anti-parallel
Strand 3
A
197 208anti-parallel
Strand 4
A
219 221anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 187first strand
Strand 2
A
245 255anti-parallel
Strand 3
A
197 208anti-parallel
Strand 4
A
239 240anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 355first strand
Strand 2
A
671 673anti-parallel
Strand 3
A
654 658parallel
Strand 4
A
636 639parallel
Strand 5
A
369 372parallel
Strand 6
A
564 569parallel
Strand 7
A
613 615parallel
Strand 8
A
591 592parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 389first strand
Strand 2
A
535 544anti-parallel
Strand 3
A
511 521anti-parallel
Strand 4
A
462 469anti-parallel
Strand 5
A
451 457anti-parallel
Strand 6
A
438 446anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 389first strand
Strand 2
A
535 544anti-parallel
Strand 3
A
478 483parallel
Strand 4
A
486 489anti-parallel
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